View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12788_high_1 (Length: 418)
Name: NF12788_high_1
Description: NF12788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12788_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Original strand, 5019898 - 5020293
Alignment:
| Q |
19 |
tatgcttctcttttttggttctttaattaggatttaggaagcataaagcctaaattatgcatctattgtgcacaa-cagtacgaggtgatgaacacatca |
117 |
Q |
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| T |
5019898 |
tatgcttctcttttttggttctttaattaggatttaggaagcataaagcctaaattatgcatctattgtgcacaaacagtatgaggtgatgaacacatca |
5019997 |
T |
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| Q |
118 |
gcaatactgatctagaaaattgatctgtgaaaagttgcaatgaatttatcaaataaacttgtttttgaaatatcattttctcttcaacttatttttcaaa |
217 |
Q |
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| T |
5019998 |
gcaatactgatctagaaaattgatctgtgaaaagttgcaatgaatttatcaaataaacttgcttttgaaatatcattttctcttcaacttatttttcaaa |
5020097 |
T |
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| Q |
218 |
atgtataaaagggatatataatatgtaaattatataaaatttgttattttagtctttttgttgttaagatactaaggatatgtttgctacacatgataga |
317 |
Q |
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| T |
5020098 |
atgtataaaagggatttataatatgtaaagtatataaaatttgttattttagtctttttgttgttaagatactaaggatctgtttggtacacatgataga |
5020197 |
T |
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| Q |
318 |
gatatcatatcttgatttaatccggtgttttgtagaccaatnnnnnnngatacattaaactcatttttaatcctatcttactcaccctttgctact |
413 |
Q |
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| T |
5020198 |
gatatcatatcctaatttaatccggtgttttgtggaccaataaaaaaggatacattaaactcatttttaatcctatcttactcaccctttgttact |
5020293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 129178 - 129142
Alignment:
| Q |
372 |
ttaaactcatttttaatcctatcttactcaccctttg |
408 |
Q |
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| T |
129178 |
ttaaactcatttttaatcctatcatattcaccctttg |
129142 |
T |
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