View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12788_low_3 (Length: 330)
Name: NF12788_low_3
Description: NF12788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12788_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 33716283 - 33716568
Alignment:
| Q |
18 |
ctattttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttc |
116 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33716283 |
ctattttgattccaggctttcccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccgcaacgttc |
33716382 |
T |
|
| Q |
117 |
acgatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttccccattcatcaaatccaaggcaaagc |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
33716383 |
acaatagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgttgttcctcattcatcaaatccaaggcaaagc |
33716482 |
T |
|
| Q |
217 |
tcttgcctttcatttgaacattgaccgtttctatgttgcttgcatctttaatcacacatcttttttcctcaaacaacgctttataa |
302 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||| |||||||||||| |||||||| |
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| T |
33716483 |
tcttgcctttcatttgaacattgaccatttgtatgttgtttgcatctttaatcacacattttttatcctcaaacaacactttataa |
33716568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 28697789 - 28698086
Alignment:
| Q |
21 |
ttttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacg |
119 |
Q |
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|||| |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28697789 |
ttttagttccaggatttcccctgaaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccgcaacgttcacg |
28697888 |
T |
|
| Q |
120 |
atagatggatggtggaggaacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttccccattcatcaaatccaaggcaaagctct |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |||| |||| ||||||||||||| |||||||| |
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| T |
28697889 |
atagatggatggtggaggaacgcaacaccaacctgaatccttccatccttgggtacaacaacatgttgttcctcatttatcaaatccaaggaaaagctct |
28697988 |
T |
|
| Q |
220 |
tgcctttcatttgaacattgaccgtttctatgttgcttgcatctttaatcacacatcttttttcctcaaacaacgctttataagcattctctagcagt |
317 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |||||||||||| | |||||| |||||||||||||| |
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| T |
28697989 |
tgcctttcatttgaacattgaccatttctatgttgtttgcatctttaatcacacattttttatcctcaaacaactccttataaccattctctagcagt |
28698086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 38 - 317
Target Start/End: Complemental strand, 627782 - 627503
Alignment:
| Q |
38 |
ccctggaacaggttctttgacagattttgcagagtttccattgattgtatcgacggaactcatcactcccacaacgttcacgatagatggatggtggagg |
137 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| || |||||||||||||||||||||||| | |
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| T |
627782 |
ccctgaaacaggttctttgacagattttgtagagtttccattgattgtatccatggaactcatcactcccgcagcgttcacgatagatggatggtggaag |
627683 |
T |
|
| Q |
138 |
aacgcaacaccaacttgaatccttccttccttgtgtacaacaacatgtttttccccattcatcaaatccaaggcaaagctcttgcctttcatttgaacat |
237 |
Q |
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|| ||||||||||| ||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
627682 |
aatgcaacaccaacctgaatccttccttccttatgtacagcaacatgttgttcctcattcatcaaatccaaggaaaagctcttgcatttcatttgaacat |
627583 |
T |
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| Q |
238 |
tgaccgtttctatgttgcttgcatctttaatcacacatcttttttcctcaaacaacgctttataagcattctctagcagt |
317 |
Q |
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||||| ||||||| ||| |||||||| ||||||||||| |||| |||||||||||| | |||||| |||||||||||||| |
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| T |
627582 |
tgaccatttctatattgtttgcatctgtaatcacacattttttatcctcaaacaacaccttataaccattctctagcagt |
627503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 50793804 - 50793736
Alignment:
| Q |
21 |
ttttggttccaggctt-tccctggaacaggttctttgacagattttgcagagtttccattgattgtatc |
88 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50793804 |
ttttggttccaggcttgtccctggaacaggttctttgacagattttgcagaatttccattgattgtatc |
50793736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 27711570 - 27711514
Alignment:
| Q |
21 |
ttttggttccaggctttccc-tggaacaggttctttgacagattttgcagagtttcc |
76 |
Q |
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||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
27711570 |
ttttggttccaggatttcccctggaacatgttctttgacagattttgcagagtttcc |
27711514 |
T |
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