View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12788_low_4 (Length: 284)
Name: NF12788_low_4
Description: NF12788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12788_low_4 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
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|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 5289833 - 5289571
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289833 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5289734 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
5289733 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgtccatatgtgaaaaggtatat |
5289634 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289633 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
5289571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5310383 - 5310645
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310383 |
gatgcaaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5310482 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
5310483 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggccttcgtccatatgtgaaaaggtatat |
5310582 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310583 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
5310645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5284294 - 5284556
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5284294 |
gatgcaaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaagtcaaagatta |
5284393 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5284394 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacat |
5284493 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
5284494 |
gatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctga |
5284556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 5302482 - 5302736
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302482 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5302581 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302582 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtcttcgcccatatgtgaaaaggtacat |
5302681 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5302682 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagat |
5302736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 5315097 - 5315359
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5315097 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
5315196 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
5315197 |
ctcacttaatcgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtcttcgcccatatgtgaaaagatacat |
5315296 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5315297 |
gatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctga |
5315359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 46707124 - 46706862
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46707124 |
gatgccaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
46707025 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
46707024 |
cccacttaatcgtttgcactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtcttcgcccatatgtgaaaaggtatat |
46706925 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||| |||||||||||| || ||||||||||| |
|
|
| T |
46706924 |
gatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctga |
46706862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 32531019 - 32530975
Alignment:
| Q |
143 |
tggtgtagacatgcctggagccgattatcaactcacaaaactctt |
187 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
32531019 |
tggtgtagacatgccgggtgccgattaccaactcactaaactctt |
32530975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 44128560 - 44128826
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
44128560 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44128659 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
44128660 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44128759 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgaaaac |
284 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
44128760 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaac |
44128826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 44132765 - 44133031
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
44132765 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44132864 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
44132865 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44132964 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgaaaac |
284 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
44132965 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaac |
44133031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 44141187 - 44141453
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
44141187 |
gatgctaggcaagacatggtggtggtagaggtacctagactagggaaggaggctgcagtgaaggccataaaagaatggggtcaaccaaagtcaaagatta |
44141286 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
44141287 |
ctcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtcttcgcccatatgtgaaaaggtatat |
44141386 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgaaaac |
284 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
44141387 |
gatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaac |
44141453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 1504963 - 1505225
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1504963 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgccgtaaaagctataaaagaatggggtcagccaaagtcaaagatta |
1505062 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
1505063 |
ctcacttaattgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtcttcgcccatatgtgaagaggtacat |
1505162 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
1505163 |
gatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctga |
1505225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 1492154 - 1492416
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1492154 |
gatgctagacaagacatggtggtggtagaagtacctagactagggaaggaggctgcagtgaaggctataaaagaatggggtcaaccaaagtcaaagatta |
1492253 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
1492254 |
ctcacttaatcgtttgcaccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtcttcgtccatatgtaaaaagatacat |
1492353 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||| || ||||||||||| |
|
|
| T |
1492354 |
gatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctga |
1492416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 1477985 - 1478247
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1477985 |
gatgctaggcaggacatggtggtggtagaagtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggccaaccaaaatcaaagatta |
1478084 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| || |
|
|
| T |
1478085 |
cacacttgatcttttgcaccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtcttcgtccatatgtgaagaggtatat |
1478184 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
1478185 |
gatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctga |
1478247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 1482179 - 1482441
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1482179 |
gatgctaggcaagacatggtggtggtagaggtgcctagactaggaaaggaggctgcagtgaaggctataaaagaatggggccaaccaaaatcaaagatta |
1482278 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| |||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
1482279 |
cacacttaatattttgtaccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtcttcgtccatatgtgaagagatacat |
1482378 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
1482379 |
gatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctga |
1482441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 1509110 - 1509375
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| |||||||| |||| ||||||||| ||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
1509110 |
gatgctaggcaagacatggtggttgtaaaggtacctaggctaggaaaagaggttgcagtgaaggctataaaagaatggggccagccaaaatcaaagatta |
1509209 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || |||||| ||||||||||||||||||| || ||| ||||||| |||||||||| || ||||| || ||||||| ||||||||| ||||||||||| |
|
|
| T |
1509210 |
cacatttaatcttttgcaccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtcttcacccatatgtaaaaaggtacat |
1509309 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgaaaa |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| |||||| || |||||||||||||| |
|
|
| T |
1509310 |
gatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaa |
1509375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 1499226 - 1499473
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
1499226 |
gatgctaggcaagacatgatggcggtagagatacctagactagggaaggaggctgcagtgaaggctatcgaagaatggggtcaaccgaagtcaaatatta |
1499325 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
1499326 |
cacatttaattttttgcacctatagtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggtcttaacccatatgtgaaaaggtacat |
1499425 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggc |
265 |
Q |
| |
|
||||||||||| |||||||| ||||||||| || || ||||||||||| |
|
|
| T |
1499426 |
gatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggc |
1499473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 1486656 - 1486918
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1486656 |
gatgctaggcaagacatggtggtgcgagacgtgcctaggctaggaaatgaggctgcagtgaaagctataaaagaatagggccaaccaaagtcaaagatta |
1486755 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| |||||||| ||||||||| |||||| ||| ||||||||| |||||||| ||||||||||||||||| |||||| |||| |||||||| |||| || |
|
|
| T |
1486756 |
cacacttaatattttgcaccatgagtggtataggcatgcctggtgccgattaccaactcacaaaactcttaggtctttgcccggatgtgaaacggtatat |
1486855 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||| ||||||||||| || |||||||| ||||| || || |||| |||||| || |||||||| |
|
|
| T |
1486856 |
gatataccaacaaggatgctttgcagggggcactgttctacgttaggccaaggacttggctga |
1486918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 24163922 - 24163664
Alignment:
| Q |
22 |
ctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagattactca |
121 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
24163922 |
ctaggcaagacatggtggtagtagaggcaccaagactaggaaaggaggcagccgtgaaggctataaaagaatggggccaaccaaagtcaaagatcacaca |
24163823 |
T |
|
| Q |
122 |
cttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacatgatg |
221 |
Q |
| |
|
|||||| ||||||| | |||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| ||| |||||||| |||||| |
|
|
| T |
24163822 |
cttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtcttcgcccatgtgtaaaaaggtatatgatg |
24163723 |
T |
|
| Q |
222 |
taccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
24163722 |
taccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctga |
24163664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 37859500 - 37859234
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||| || |||||||||||||| || |||||||| ||||||||||| ||||| ||| || || || || |||||||||||||| ||||| ||||||| |
|
|
| T |
37859500 |
gatgcaagacaagacatggtggttgtggaggtaccaagactaggaaaagaggcagcaacaaaggccatcaaggaatggggtcaacctaagtccaagatta |
37859401 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
| ||| | ||| |||||||||| ||||| || |||||||| || ||||| ||||| || ||||| |||||||| ||||| ||||||||||| | ||||| |
|
|
| T |
37859400 |
cccacctcatcttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgggccttcgtccatatgtgaagcgttacat |
37859301 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgaaaac |
284 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
37859300 |
gatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaac |
37859234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 37863487 - 37863260
Alignment:
| Q |
57 |
ctaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgc |
156 |
Q |
| |
|
|||||||| ||||||||| || ||||| || |||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| || |||| |
|
|
| T |
37863487 |
ctaggaaaagaggctgcaacaaaggctatcaaggaatggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgc |
37863388 |
T |
|
| Q |
157 |
ctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgct |
256 |
Q |
| |
|
|||| || || ||||| |||||||| ||||||||||||||||| |||||||| | || |||||||| |||||||| |||||||| ||||| |||||||| |
|
|
| T |
37863387 |
ctggtgctgactatcagctcacaaagctcttgggtcttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgct |
37863288 |
T |
|
| Q |
257 |
tcgtttggccaaagatttggctgaaaac |
284 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
37863287 |
tcgtttggctaaagatttggctgaaaac |
37863260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 81 - 280
Target Start/End: Original strand, 39030120 - 39030319
Alignment:
| Q |
81 |
gctataaaagaatggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaa |
180 |
Q |
| |
|
||||| || |||||||||||||| ||||||| | ||||||| | || ||||||| |||||||||| || ||||||||||| || ||||| ||||||| |
|
|
| T |
39030120 |
gctatcaatgaatggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctcacaa |
39030219 |
T |
|
| Q |
181 |
aactcttgggtcttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
| ||||| || ||| | |||||||| || | || ||||||||||||||||| |||||||| |||| | || ||||| ||||| |||||||||||||| |
|
|
| T |
39030220 |
agctcttaggcctttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctga |
39030319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 35250797 - 35251059
Alignment:
| Q |
18 |
gatgctaggcaagacatggtggtggtagaggtacctagactaggaaaggaggctgcagtgaaagctataaaagaatggggtcaaccaaagtcaaagatta |
117 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| || || ||||||| || || ||| ||||| || || |||||||||||||||||||| ||||| | |
|
|
| T |
35250797 |
gatgcaagacaagatatggtggtagtagaggtgccaaggttaggaaaagaagcagcaacaaaagcgatcaaggaatggggtcaaccaaagtccaagatca |
35250896 |
T |
|
| Q |
118 |
ctcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtcttcgcccatatgtgaaaaggtacat |
217 |
Q |
| |
|
||||| | || |||||| || |||||||| || |||||||| || |||||||| ||||||||| | | || ||||| || | |||||| | || || |
|
|
| T |
35250897 |
ctcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctcacaaaattgctaggacttcgtccgtcggtgaaacgttatat |
35250996 |
T |
|
| Q |
218 |
gatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctga |
280 |
Q |
| |
|
||||||||||||||||||||| || ||||| | ||| ||||||||||| |||||||||||||| |
|
|
| T |
35250997 |
gatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctga |
35251059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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