View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12788_low_5 (Length: 207)
Name: NF12788_low_5
Description: NF12788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12788_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 20103721 - 20103548
Alignment:
| Q |
19 |
gaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggcaatcagagtacagga |
118 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
20103721 |
gaaagacacatcacagtcatgctcagttgtagcggcactcgtcgcaggcgtctcctttgctacatcaggcagcgtccccggaggtaatcagaatactgga |
20103622 |
T |
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| Q |
119 |
aaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctgc |
192 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20103621 |
aaaccaacattcgaaggacagcctgcattcgaagtattctctatatcttcgttaattggactttacttctctgc |
20103548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 20079404 - 20079234
Alignment:
| Q |
19 |
gaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggcaatcagagtacagga |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||| | |||| |
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| T |
20079404 |
gaaagacacatcagagtcatgctcagttgtagcagcactcgtcgcaggcgtctcctttgctacatcaggcagtgtccctggaggcaatgaccaatcaggg |
20079305 |
T |
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| Q |
119 |
aaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctc |
189 |
Q |
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||||||| ||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
20079304 |
aaaccaaatttcgaaggacagcctgcatttgaagtattctcgatatgttcattaattggactttacttctc |
20079234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 19903661 - 19903833
Alignment:
| Q |
19 |
gaaagacacatcacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggcaatcagagtacagga |
118 |
Q |
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|||| ||||| || ||||| ||||| |||| |||||||||||||| || |||||||||||||||||| ||| ||||| ||||||||| | |||| |
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| T |
19903661 |
gaaaaacacaacagagtcaagctcaattgtggcagcactcgtcgcaggcgtctcctttgctacatcatgcactgtccctggaggcaatgaccaatcaggg |
19903760 |
T |
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| Q |
119 |
aaaccaacattcgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctg |
191 |
Q |
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||||||| || ||||||||||||||||||| ||||||||| || ||| |||| ||||||||||||||||| |
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| T |
19903761 |
aaaccaaatttaaaaggacaacctgcatttgatttattctctacatgttcattaactggactttacttctctg |
19903833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 20130930 - 20130769
Alignment:
| Q |
30 |
cacagtcatgctcagttgtagcagcactcgtcgcgggtgtctcctttgctacatcaggcagcgtccccggaggcaatcagagtacaggaaaaccaacatt |
129 |
Q |
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|||| |||||||||| |||||||||| |||| || || ||||||| || |||| | |||| ||||||||||||||| || ||||| ||| || ||| |
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| T |
20130930 |
cacaatcatgctcagctgtagcagcaatcgttgccggcatctccttcgcaacattaagcagtgtccccggaggcaataaggaaacagggaaatcatcatc |
20130831 |
T |
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| Q |
130 |
cgaaggacaacctgcatttgaagtattctctatatcttcgttaattggactttacttctctg |
191 |
Q |
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|||| ||| ||||||| |||| |||| | |||||||| ||||||||| ||||||| |||| |
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| T |
20130830 |
agaagaacatactgcattagaaggattcgcaatatcttcattaattggagtttacttttctg |
20130769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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