View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12789_low_1 (Length: 563)
Name: NF12789_low_1
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Complemental strand, 5829342 - 5828802
Alignment:
| Q |
18 |
cttttgttattctctattctctttaattttctacattgttaacatggtatcaagagcatccttcttaagctactaagtttccgctattgagttcccaaaa |
117 |
Q |
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| T |
5829342 |
cttttgttattctctattctctttaattttctatattgttaacatggtatcaagagcatccttcttaaactactaagtttccgctattgagttcccaaaa |
5829243 |
T |
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| Q |
118 |
gtttaagaatatgttttagtagttacggccttttggaattgaattttgaatgtaagagcgtgctggatttttaaaagattagtgtatttaagtttcatga |
217 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5829242 |
atttgagaatatgttttagtagttacggcctcttggaattgaattttgaatgtaagagcgtgttggatttttaaaagattagtgtatttaagtttcatga |
5829143 |
T |
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| Q |
218 |
atggtatgtttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgttttt |
317 |
Q |
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| T |
5829142 |
atggtatgtttttgcggggatggattttgcaactttgttggatcttgttggtggcgtttgtgtaagaatcatatgaagggttttgcttcagggtgttctt |
5829043 |
T |
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| Q |
318 |
ccacgaatttcatgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5829042 |
ccacgaatttcatgagtttgcttatgggttgtaaatttagaagatttgtgaagaactctattaaggtgtattttttggataatttggtgagtcaagttat |
5828943 |
T |
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| Q |
418 |
tgttgataatgtgtttgtgaaaagtctttattgacgatgtatttgaattttttggttgctcctctttattagttcctctctctattagacggttggttct |
517 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5828942 |
tgttgataatgtgtttgtgaaaagtctttattgatgatgtatttgaatttttttgttgctcctctttattagttcctctctctattagacagttggttct |
5828843 |
T |
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| Q |
518 |
tctctttggttattgtgtcttcttttattgttcttctctct |
558 |
Q |
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| T |
5828842 |
tctctttggttattgtgtcttcttttattgttcttctctct |
5828802 |
T |
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