View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12789_low_3 (Length: 361)
Name: NF12789_low_3
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 43627623 - 43627297
Alignment:
| Q |
16 |
aaagaatcgagtagatatgtatttttagaaatagttttaataagatgattgatgtactactatatattatccatttatgtgaatgtcttgcattccaatt |
115 |
Q |
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| T |
43627623 |
aaagaatcgagtagatatatatttttagaaatagttttaataacatgattgatgtactactatatattatccatttatgtgaatgtcttgcattccaatt |
43627524 |
T |
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| Q |
116 |
tgaatccttcctgacaggctgacactaaatgtagcaggaattccgactgtggttcggtggttgtgagagactaacttcttctgctagaccattatatatt |
215 |
Q |
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| T |
43627523 |
tgaatccttcctgacaggctgacactaaatgtagcaggaattccaactgtggttcggtggttgtgagagactaacttctcctgctagaccattatata-t |
43627425 |
T |
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| Q |
216 |
tgaccttacctgaggtccttgttgagttttaggatcaaaaggatctccaatgacccaggcttttgccttctccaccaacttcttctctacttgatcgtag |
315 |
Q |
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| T |
43627424 |
tgaccttacctgaggtccttgttgagttttaggatcaaaaggatctccaatgacccaggcttttgccttctccaccaacttcttctctacttgatcgtag |
43627325 |
T |
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| Q |
316 |
atcccttcctgaacaaacacacgggaac |
343 |
Q |
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| T |
43627324 |
atcccttcctgaacaaacacacgggaac |
43627297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 43620800 - 43620675
Alignment:
| Q |
219 |
ccttacctgaggtccttgttgagttttaggatcaaaaggatctccaatgacccaggcttttgccttctccaccaacttcttctctacttgatcgtagatc |
318 |
Q |
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| T |
43620800 |
ccttacttgaggtccttgctgaactttaggatcaaatgggtctccaatgacccaagttttagccttttctaccaattttttctcaaattcatcatagatc |
43620701 |
T |
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| Q |
319 |
ccttcctgaacaaacacacgggaact |
344 |
Q |
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| T |
43620700 |
ccttcttgaacaaacacacgtgaact |
43620675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 32407087 - 32407208
Alignment:
| Q |
222 |
tacctgaggtccttgttgagttttaggatcaaaaggatctccaatgacccaggcttttgccttctccaccaacttcttctctacttgatcgtagatccct |
321 |
Q |
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||||||||| ||||||||| |||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||| | || ||| ||||| ||| |
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| T |
32407087 |
tacctgaggcccttgttgaactttaggatcaaaaggatcaccaacaacccaagcttttgctttctccaccaacttcttctcaaattcatcatagattcct |
32407186 |
T |
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| Q |
322 |
tcctgaacaaacacacgggaac |
343 |
Q |
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|| |||||||||||||| |||| |
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| T |
32407187 |
tcttgaacaaacacacgagaac |
32407208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 32434676 - 32434563
Alignment:
| Q |
219 |
ccttacctgaggtccttgttgagttttaggatcaaaaggatctccaatgacccaggcttttgccttctccaccaacttcttctctacttgatcgtagatc |
318 |
Q |
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|||||| || |||||||||||| ||||||||||||||| || |||| |||||| ||| ||||| |||| || |||||||| | || |||||| ||| |
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| T |
32434676 |
ccttacttggggtccttgttgaactttaggatcaaaagggtcgccaacgacccaatttttcgccttttccaacactttcttctcaaattcatcgtaaatc |
32434577 |
T |
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| Q |
319 |
ccttcctgaacaaa |
332 |
Q |
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||||| || ||||| |
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| T |
32434576 |
ccttcttggacaaa |
32434563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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