View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12789_low_4 (Length: 360)
Name: NF12789_low_4
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 38360177 - 38359851
Alignment:
| Q |
17 |
gagataaccatgttgacaacatatctgacattgattatcttagcattaaatcttctttggtttatgcaaaaccagttggtgttgaagaagtgaattatgg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
38360177 |
gagataaccatgttgacaacatatctgacattgattatcttagcattaaatcttctttggtttatgcaaaaccagatggtgttgaagcagtgaattatgg |
38360078 |
T |
|
| Q |
117 |
cagatagagcaaccaatctacaatgcggggaccaatttctttcagctatccttatgatgtccaaaaaacatgaaaagtttcaggtgattttgagaatgtg |
216 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38360077 |
cagatagagcaaccagtctacattgtggggaccaatttcttttagctatccttatgatgtccaaaaaacttgaaaagtttcaggtgattttgagaatgtg |
38359978 |
T |
|
| Q |
217 |
aaacaaccagg-ccaaatgtcataagagaaagtgcattcaaggaacatgtgagattgagtttcttgatttttccacaaagagaacaaatagagggaagca |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38359977 |
aaacaaccaggaccaaatgtcataagagaaagtgcattcacggaacatgtgagattgagtttcttgatttttccacaaagagaaaaaatagagggaagca |
38359878 |
T |
|
| Q |
316 |
aacaacctcttttcgcaagaatgtcat |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38359877 |
aacaacctcttttcgcaagaatgtcat |
38359851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University