View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12789_low_5 (Length: 313)
Name: NF12789_low_5
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 3945152 - 3945440
Alignment:
| Q |
11 |
caaaggtaccaaattaa-gatgaccttgaacttgaactgaggattaagtttattgttcactctagatcaaagaagtaactgatgaaccaatattagaagc |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945152 |
caaaggtaccaaattaaagatgaccttgaacttgaactgaggattgagtttattgttcactctagatcaaagaagtaactgatgaaccaatattagaagc |
3945251 |
T |
|
| Q |
110 |
ttgatcgttccaaacaccaatagctgatgatgatgctgtattccagtaaagtgaagaagcagctggatcatacaaaccacccacatgctccatctctcct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945252 |
ttgatcgttccaaacaccaatagctgatgatgatgctgtattccagtaaagtgaagaagcagctggatcatacaaaccacccacatgctccatctctcct |
3945351 |
T |
|
| Q |
210 |
tcatctttcttcattcctttctcacttccattccccaaattgttgaattccaagccctgaaaactgttgctaccatcattgatgaattt |
298 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945352 |
tcatctttcttcgttcctttctcacttccattccccaaattgttgaattccaagccctgaaaactgttgctaccatcattgatgaattt |
3945440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University