View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12789_low_7 (Length: 291)
Name: NF12789_low_7
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 125 - 281
Target Start/End: Complemental strand, 4014228 - 4014072
Alignment:
| Q |
125 |
aacacatcaacatccttatcctctcaccatatccaccgacttcaacaatagaaagttgctttgcaaaccatctaaaggaaaatatgttaaagaagactat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4014228 |
aacacatcaacatccttatcctctcaccatatccaccgacttcaacaatagaaagttgctttgcaaaccacctaaaggaaaacatgttaaagaagactat |
4014129 |
T |
|
| Q |
225 |
cttgtggtatgtcatttctaatagctttgnnnnnnnaatactaaatttgggtctgtg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4014128 |
cttgtggtatgtcatttctaatagctttgtttttttaatactaaatttgggtctgtg |
4014072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 125 - 281
Target Start/End: Original strand, 13974968 - 13975124
Alignment:
| Q |
125 |
aacacatcaacatccttatcctctcaccatatccaccgacttcaacaatagaaagttgctttgcaaaccatctaaaggaaaatatgttaaagaagactat |
224 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| |
|
|
| T |
13974968 |
aacatatcaacatccttatcctctcaccatatccaccgacttcaacaatagaaagttgctttgcaaaccacctaaaggataacattttaaagaagactat |
13975067 |
T |
|
| Q |
225 |
cttgtggtatgtcatttctaatagctttgnnnnnnnaatactaaatttgggtctgtg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13975068 |
cttgtggtatgtcatttctaatagctttgtttttttaatactaaatttgggtctgtg |
13975124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University