View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12789_low_8 (Length: 274)

Name: NF12789_low_8
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12789_low_8
NF12789_low_8
[»] chr7 (5 HSPs)
chr7 (1-260)||(46638960-46639219)
chr7 (60-260)||(46620242-46620442)
chr7 (17-257)||(46630742-46630982)
chr7 (15-257)||(46172799-46173041)
chr7 (38-257)||(46641600-46641813)
[»] chr1 (1 HSPs)
chr1 (7-257)||(15767939-15768183)
[»] chr3 (1 HSPs)
chr3 (1-84)||(18373813-18373896)
[»] chr5 (1 HSPs)
chr5 (90-141)||(1537853-1537904)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 46639219 - 46638960
Alignment:
Q  1 aatatctagctaacactaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46639219 aatatctagctaacactaccatctccattgaaatatttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgc 46639120  T
Q  101 ctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctat 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46639119 ctcatgtacgagccttgcgacaaggattgaaaggatcttggtgtgtctggatgtctttctttttctgtctctttggcacatgcaggaattcatttgctat 46639020  T
Q  201 acattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46639019 acattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattcat 46638960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 46620442 - 46620242
Alignment:
Q  60 agtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc 159  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46620442 agtcccatgatctgaacaacaacgatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttc 46620343  T
Q  160 tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46620342 tttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttcctagagctctgtctcctcggattca 46620243  T
Q  260 t 260  Q
    |    
T  46620242 t 46620242  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 46630982 - 46630742
Alignment:
Q  17 taccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagcctt 116  Q
    ||||| ||||||| ||||| |||||||| |  ||||||| || ||| |||||||||||||||  |  | |||||||| ||||||||| | ||| | ||||    
T  46630982 taccacctccattcaaatgcttttcttcctatgctaaaactgcagtaccatgatctgaacaatgacgaggcagcattgttttgcctcttttacaatcctt 46630883  T
Q  117 gcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctcta 216  Q
    || ||||||||||| | ||||||| || |||||||| |||||| |||| || |||||||||||||||| |||||||||||||||| ||||||||||||||    
T  46630882 gcagcaaggattgagatgatcttgttgcgtctggatgtctttccttttttgcctctttggcacatgcaagaattcatttgctatatattccaatgctcta 46630783  T
Q  217 acggttaagggtctgttcctagagctctgtctcctcggatt 257  Q
    || || || ||||| || |||  ||||||||||||||||||    
T  46630782 actgtcaatggtctttttctattgctctgtctcctcggatt 46630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 46172799 - 46173041
Alignment:
Q  15 actaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagcc 114  Q
    ||||||||||||| | ||||| |||||||||||  ||  || || | |||| ||||||||||||  |  ||||||  ||  |||||||  ||| ||||||    
T  46172799 actaccatctccaatcaaatgcttttcttcttgtactgcaactgcattcccgtgatctgaacaatgacgatgcagtgttgatttgccttttgttcgagcc 46172898  T
Q  115 ttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctc 214  Q
    |||||||||||||||||| |||||| ||| |||||| | ||||||||||| ||| ||||  | |||||||   |||||||||||||||||||||||||||    
T  46172899 ttgcggcaaggattgaaaagatctttgtgggtctggctgtctttctttttttgtttcttctgtacatgcaaatattcatttgctatacattccaatgctc 46172998  T
Q  215 taacggttaagggtctgttcctagagctctgtctcctcggatt 257  Q
    |||| || || |||||||| |||| |||||||||||| |||||    
T  46172999 taactgtcaacggtctgtttctagtgctctgtctcctgggatt 46173041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 46641600 - 46641813
Alignment:
Q  38 tttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatgtacgagccttgcggcaaggattgaaaggatc 137  Q
    ||||||||||  |||||| || | |||||||||||||||||  |  | |||||||| |||  |||| |||| ||||||||| ||||||||||||||||||    
T  46641600 tttcttcttgttctaaaactgcattcccatgatctgaacaatgacgacgcagcattgtttcacctcttgtatgagccttgccgcaaggattgaaaggatc 46641699  T
Q  138 ttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattccaatgctctaacggttaagggtctgttccta 237  Q
    || |||||      | ||| || |||| |||||  || |||||||||  ||||||||||| |||||||||||||||||||| || |  | |||||| |||    
T  46641700 ttagtgtg------tgtctctccttttatgtctactttgcacatgcaaaaattcatttgcaatacattccaatgctctaactgtcagcgatctgtttcta 46641793  T
Q  238 gagctctgtctcctcggatt 257  Q
    | ||| ||||||||| ||||    
T  46641794 gtgctttgtctcctcagatt 46641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 15767939 - 15768183
Alignment:
Q  7 tagctaacactaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataatgcagcattattttgcctcatg 106  Q
    ||||||||||||| ||||||| | ||||||||||||||||| ||||||| || | | |||||||||||||||  || |      |||  |||||||  ||    
T  15767939 tagctaacactacgatctccaatcaaatgtttttcttcttgtgctaaaactgaattaccatgatctgaacaatgatga------attgatttgccttttg 15768032  T
Q  107 tacgagccttgcggcaaggattgaaaggatcttggtgtgtctggatatctttctttttctgtctctttggcacatgcaggaattcatttgctatacattc 206  Q
    |  ||||  ||| ||||||||||||||||||||  ||||||||||| ||||||||||| ||||||||| | || |||||| |||||||||||||||||||    
T  15768033 tttgagcactgcagcaaggattgaaaggatcttcatgtgtctggatgtctttctttttttgtctcttttgtacgtgcaggtattcatttgctatacattc 15768132  T
Q  207 caatgctctaacggttaagggtctgttcctagagctctgtctcctcggatt 257  Q
     ||||||||||| || || |||||||| |||| ||| |||| ||| |||||    
T  15768133 taatgctctaactgtcaacggtctgtttctagtgctttgtcgcctaggatt 15768183  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18373813 - 18373896
Alignment:
Q  1 aatatctagctaacactaccatctccattgaaatgtttttcttcttgcgctaaaattgtagtcccatgatctgaacaacaataa 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||    
T  18373813 aatatctagctaacactaccatctccattgaaatgtttttcttcttgtgctaaaactgcagtcccatgatctgaacaataataa 18373896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 1537904 - 1537853
Alignment:
Q  90 cattattttgcctcatgtacgagccttgcggcaaggattgaaaggatcttgg 141  Q
    |||| |||||||||   |||||| ||||||||||||||||||||||||||||    
T  1537904 cattgttttgcctctcatacgaggcttgcggcaaggattgaaaggatcttgg 1537853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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