View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12789_low_9 (Length: 257)
Name: NF12789_low_9
Description: NF12789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12789_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31454308 - 31454063
Alignment:
| Q |
1 |
ttcagcagtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31454308 |
ttcagcagtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatc |
31454209 |
T |
|
| Q |
101 |
ctacccacaggaaactacaaccaccatagcaaattttacagttagtaaacaaaagttacttaac-aaaacaaaaaataa-----cagaggaaaatgagtc |
194 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
31454208 |
ctacccacaggaaactgcaaccaccatggcaaattttacagttaataaacaaaagttacttaacaaaaacaaaaaaaaaaaaacaagaggaaaatgagtc |
31454109 |
T |
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| Q |
195 |
tctctaatctgtaaatgataattaacaggaaacaacatctacatga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31454108 |
tctctaatctgtaaatgataattaacaggaaacaacatctacatga |
31454063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 51449048 - 51448939
Alignment:
| Q |
7 |
agtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatcctaccc |
106 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51449048 |
agtcagatactccagaattgatgccagatacactgcagctgttgctcccacacgtccattagcttggactctgtgcttcagctgtctgtggatcctaccc |
51448949 |
T |
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| Q |
107 |
acaggaaact |
116 |
Q |
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|||||||||| |
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| T |
51448948 |
acaggaaact |
51448939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 17200274 - 17200165
Alignment:
| Q |
7 |
agtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatcctaccc |
106 |
Q |
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|||||||||||| ||||| ||||||| ||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
17200274 |
agtcagatactctagaattgatgccagataaactacagctgttgctcccacacgtccattagcatggactctttgcttcagctatttgtggatcctaccc |
17200175 |
T |
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| Q |
107 |
acaggaaact |
116 |
Q |
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||| |||||| |
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| T |
17200174 |
acatgaaact |
17200165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 9279868 - 9279972
Alignment:
| Q |
5 |
gcagtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatcctac |
104 |
Q |
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|||||||||||||| ||||| ||||||| ||| ||||||| | ||||||| ||||||| ||| |||||| ||||||||||||||| |||||||||||| |
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| T |
9279868 |
gcagtcagatactctagaattgatgccagataaactgcagttattgctcccacacgtctgttatattggaccctttgcttcagctgtttgtggatcctac |
9279967 |
T |
|
| Q |
105 |
ccaca |
109 |
Q |
| |
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||||| |
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|
| T |
9279968 |
ccaca |
9279972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 9290839 - 9290943
Alignment:
| Q |
5 |
gcagtcagatactccagaatggatgccaaatacactgcagctgttgctccgacacgtccattagcttggactctttgcttcagctgtctgtggatcctac |
104 |
Q |
| |
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|||||||||||||| ||||| ||||||| ||| ||||||| | ||||||| ||||||| ||| |||||| ||||||||||||||| |||||||||||| |
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| T |
9290839 |
gcagtcagatactctagaattgatgccagataaactgcagttattgctcccacacgtctgttatattggaccctttgcttcagctgtttgtggatcctac |
9290938 |
T |
|
| Q |
105 |
ccaca |
109 |
Q |
| |
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||||| |
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| T |
9290939 |
ccaca |
9290943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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