View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279-Insertion-2 (Length: 484)
Name: NF1279-Insertion-2
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 38945236 - 38944763
Alignment:
| Q |
8 |
aatataattattccaaccatgcatgacctgcacgtttattgttctctttgtttttatcgatggattatttttcgttttgattcatgataactatgtaggt |
107 |
Q |
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| T |
38945236 |
aatataattattccaaccatgcatgacctgcacgtttattgttctctttgtttttatcgatggattatttttcgttttgattcatgataactctgtaggt |
38945137 |
T |
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| Q |
108 |
agacacgttatacctcatatctagatgtcgagttgctcaccaaattttgacaatcaaccttaattgctcagttttcacatcttgatactcggtaactttt |
207 |
Q |
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| T |
38945136 |
agacacgttatacctcatatctagatgtcgagttgctcaccaaattttgacaatcaaccttaattgctcagttttcacatcttgatactcggtaactttt |
38945037 |
T |
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| Q |
208 |
tcgtttcaagcaccattttagtggaaaagacaattagtcaattgtatggtaaaatgtgaaaacaattggaacaggtnnnnnnntatggtttgaaaaagtt |
307 |
Q |
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| T |
38945036 |
tcgtttcaagcaccattgtagtggaaaagacaattagtaaattttatggtaaaatgtgaaaacaattggaaca-ttaaaaaaatatggtttgaaaaagtt |
38944938 |
T |
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| Q |
308 |
gtgttgaattctgaccaaaacaatccttaactagattttatttacgaaaaagttgagccaatagaagttgatatctacttctt-tgttgaccaaacttta |
406 |
Q |
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| T |
38944937 |
gagttgaattctgactaagacaatccttaactagattttatttacgaaaaagttgagtcaatagaagttgatatctacttcttctgttgaccaaacttta |
38944838 |
T |
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| Q |
407 |
tactataggaccggaggtagtacctaatattggttgaactttggaagctcaaagatattaattactaatttatggtga |
484 |
Q |
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| T |
38944837 |
tactataggattggaggtagtacc---tattggttgaactttggaagttcaaagatattaattactaatttatggtga |
38944763 |
T |
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