View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1279-Insertion-3 (Length: 633)
Name: NF1279-Insertion-3
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279-Insertion-3 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Original strand, 5607095 - 5607719
Alignment:
| Q |
8 |
cttagacctatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagc |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607095 |
cttagacctatatctctttgtaatgttttgtataagatggtgtcgaagttgctcgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagc |
5607194 |
T |
|
| Q |
108 |
agtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgagggga |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607195 |
agtcagcgtttgtcgagggccgttccatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgagggga |
5607294 |
T |
|
| Q |
208 |
attggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607295 |
attggctctcaagattgatattaacaaggcttatgataaagtgggttgggg-gtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggat |
5607393 |
T |
|
| Q |
308 |
ctagtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggt |
407 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||| |
|
|
| T |
5607394 |
ccagtggatgatgatgtgtgttagttctgttacttattcggtgcatatgaactttgacagggtggggcctattgtacctggccgagggttgcgctagggt |
5607493 |
T |
|
| Q |
408 |
gacccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtat |
507 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5607494 |
gacccattatcaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatagaggtgatattcatggaatacaagtat |
5607593 |
T |
|
| Q |
508 |
gtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattct |
607 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5607594 |
gtcgcggtgcaccagtggtgtcccatctgttgtttgcagacgattatttcttgttttgcagggctaatgtggtggaagcgcaatgtttactcactattct |
5607693 |
T |
|
| Q |
608 |
taaaacttatgaggcatcatctggac |
633 |
Q |
| |
|
||||||||||||| |||||| ||||| |
|
|
| T |
5607694 |
taaaacttatgagacatcatttggac |
5607719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 623
Target Start/End: Original strand, 7124999 - 7125611
Alignment:
| Q |
16 |
tatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagcagtcagcg |
115 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7124999 |
tatatctctttgtaatgttttgtataagatggtttcgaaggttctcgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggatcagtcagcg |
7125098 |
T |
|
| Q |
116 |
tttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatga------agaggaagacgaagggatggcgaggggaat |
209 |
Q |
| |
|
||||||||||| || | |||| | ||||||||||||||| ||||||||||||||||||| |||| ||||||| || ||||||||| ||||||||| |
|
|
| T |
7125099 |
tttgtcgagggtcgctccatattggacaacgcgttaatagctaccgagataatccactcaatgacaatgaagaggaaaacaaagggatggagaggggaat |
7125198 |
T |
|
| Q |
210 |
tggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatct |
309 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||| |||| |||||||||||| |
|
|
| T |
7125199 |
tggctctcaagattgatattagcatggcttatgatagagtggattgggg-gtttcttcgtggcgtgcttatgcgaatgggattcagtgagaaatggattc |
7125297 |
T |
|
| Q |
310 |
agtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtga |
409 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| | | |||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7125298 |
aatggatgatgatgtgtgttagttatgttacttatttagtgcttatgaatttttatatggtggggcctattgtacccgatcgagggttgcaccagggtga |
7125397 |
T |
|
| Q |
410 |
cccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtatgt |
509 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
7125398 |
cccattatcaccatatttattcatattggtggccgagggcctctcgactctaatacataaggcaggtaatagaggtgatattcatggagtacaagtatgt |
7125497 |
T |
|
| Q |
510 |
cacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattctta |
609 |
Q |
| |
|
| ||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
7125498 |
cgcggcgcaccagtagtgtctcatctgttgtttgcagacgattgtttcttgttttgcagggctaatgtggtggaagcacaaagtttactcactattctta |
7125597 |
T |
|
| Q |
610 |
aaacttatgaggca |
623 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7125598 |
aaacttatgaggca |
7125611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Complemental strand, 43320423 - 43319799
Alignment:
| Q |
8 |
cttagacctatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagc |
107 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43320423 |
cttaggcctatatctctttgcaatgttttgtacaagatggtgttgaagttgctcactaatagactgaaacgttgtttggataaatgtgtgttagaggagc |
43320324 |
T |
|
| Q |
108 |
agtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgagggga |
207 |
Q |
| |
|
||||| | ||| || || | || | |||||| || ||||||||||| ||||||||||||| ||||| |||||||||||||| ||||||||| |||| || |
|
|
| T |
43320323 |
agtcaacttttttcaagagtcgctccatactggataacgcgttaatcgctaccgagataattcactcaatgaagaggaagacaaagggatggagaggaga |
43320224 |
T |
|
| Q |
208 |
attggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggat |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| ||| | ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
43320223 |
attggctctcaagattgatattagcaaggcgtatgatagagtagattggggg-tttcttcgtggtgtgcttatgcgaatgggattcagtgagaaatggat |
43320125 |
T |
|
| Q |
308 |
ctagtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||| |||||| |
|
|
| T |
43320124 |
acagtggatgatgatgtgtgttagttctgtcacttattcggtgcttacgaactttgacagggtgggtcctattgtacccggtcgagggttgcgtcagggt |
43320025 |
T |
|
| Q |
408 |
gacccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtat |
507 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| |||||| ||||| ||||| ||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
43320024 |
gacccgttatcaccatatttattcatattggtggctgagggtctctcgactctgatacataagatagttaatagcggtgatattcatggggtacaagtat |
43319925 |
T |
|
| Q |
508 |
gtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattct |
607 |
Q |
| |
|
||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | | ||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
43319924 |
gtcgcggtgcaccagtagtgtcccatctgttgtttgcagacgattgtttcttgttttgcaggaccaatgtggcggaagcacatcatttactcactattct |
43319825 |
T |
|
| Q |
608 |
taaaacttatgaggcatcatctggac |
633 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43319824 |
taaaacttatgaggcatcatctggac |
43319799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 623
Target Start/End: Original strand, 15130 - 15744
Alignment:
| Q |
8 |
cttagacctatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagc |
107 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15130 |
cttaggcctatatctctttgtaatgttttgtataagatggtgtcgaaagtgctcgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagc |
15229 |
T |
|
| Q |
108 |
agtcagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgagggga |
207 |
Q |
| |
|
||||||||||||||||||| || | |||| | ||||||||||||||| |||||||||||||||||| ||||||||||| || ||||||||| ||||||| |
|
|
| T |
15230 |
agtcagcgtttgtcgagggtcgctccatattggacaacgcgttaatagctaccgagataatccacttaatgaagaggaaaacaaagggatggagagggga |
15329 |
T |
|
| Q |
208 |
attggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggat |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||| |||||||||| |||||| |||| | |||||||||| |
|
|
| T |
15330 |
attggctctcaagattgatattagcaaggcttatgatagagtggattgggg-gtttcttcgtggcgtgcttatgcaaatgggattcagtaagaaatggat |
15428 |
T |
|
| Q |
308 |
ctagtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggt |
407 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||| || ||| | || |||||||| |||| ||||| |||||||||| ||||||| |
|
|
| T |
15429 |
tcagtggatgatgatgtgtgttaattttgttacttattcggtgcttatcaatttttatagaatggggcctattgtgcccggtcgagggttgcgccagggt |
15528 |
T |
|
| Q |
408 |
gacccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtat |
507 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||| ||| |||||||||||| ||||||||| |
|
|
| T |
15529 |
gacccattatcaccatatttattcatattggtgctcgagggtctctcgactctaatacataaggtagttaatagaggcgatattcatggagtacaagtat |
15628 |
T |
|
| Q |
508 |
gtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattct |
607 |
Q |
| |
|
||| ||| |||||||| || || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
15629 |
gtcgcggcgcaccagtagtatctcatctgttgtttgcagacgattgtttcttgttttgcagggctaatgtgctggaagcacaaagtttactcaatattct |
15728 |
T |
|
| Q |
608 |
taaaacttatgaggca |
623 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
15729 |
taaaatttatgaggca |
15744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Complemental strand, 39830330 - 39829718
Alignment:
| Q |
17 |
atatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagcagtcagcgt |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||| | | ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39830330 |
atatctctttgtaatgttttgtataagatgtt-tcgaagttgctcgctaatcgtctcaaacgttgtttggataaatgtgtgtcagaggagcagtcggcgt |
39830232 |
T |
|
| Q |
117 |
ttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgaggggaattggctct |
216 |
Q |
| |
|
|||| |||| || | |||||| |||||| | |||||| ||||||||||||||||||| |||||||||| || || |||||| |||||||||||||||| |
|
|
| T |
39830231 |
ttgttgaggaccactccatactggacaacacattaatagctaccgagataatccactcagtgaagaggaaaacaaacggatggagaggggaattggctct |
39830132 |
T |
|
| Q |
217 |
caagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatctagtggat |
316 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| | ||||||| ||||||||| |||||||||||||||||||||| ||||||||| || ||||||| |
|
|
| T |
39830131 |
caagattgatattagcaaggcttatgatagagtggat-ggggggtatcttcgtggcgtgcttatgcgaatggggttcagtgagaaatgaattaagtggat |
39830033 |
T |
|
| Q |
317 |
gatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtgacccatta |
416 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| || || |||||||||| ||||| |||||||||| |
|
|
| T |
39830032 |
gatgatgtgtgttagttctgttacttactcagtgcttatgaactttgacagggtggggcctattgtgcctggtcgagggttgcgccaggctgacccatta |
39829933 |
T |
|
| Q |
417 |
ttaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtatgtcacggtg |
516 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||| ||||||||| ||||||||||| |||| |
|
|
| T |
39829932 |
tcaccatatttattcatattggtggccgagggactctcgactctaatacataaagcagttaatagaggtggtattcatggggtacaagtatgttgtggtg |
39829833 |
T |
|
| Q |
517 |
caccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattcttaaaactta |
616 |
Q |
| |
|
||||| | |||||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
39829832 |
caccactagtgtcccatctgttgtttgcagacgattgttttttgttttgcagggccaatgtggtggaagcacaacgtttactcactattcttaaaactta |
39829733 |
T |
|
| Q |
617 |
tgaggcatcatctgg |
631 |
Q |
| |
|
||||| | ||||||| |
|
|
| T |
39829732 |
tgaggtagcatctgg |
39829718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 366 - 633
Target Start/End: Original strand, 86488 - 86755
Alignment:
| Q |
366 |
agggtggggcctgttgtacccggccgagggttgcaccagggtgacccattattaccatatttattcatattggtggatgagggcctctcaactctaatac |
465 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
86488 |
agggtagggcctattgtacccggccgagggttgcgtcagggtgacccattatcaccatatttattcatattggtggttgagggcctctcaactctaatac |
86587 |
T |
|
| Q |
466 |
ataaggcagttaatataggtgatattcatggaatacaagtatgtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttg |
565 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| || ||||||||| ||| ||||||||||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
86588 |
ataaggaagttaatagaggtgatattcatggggtaaaagtatgtcgcggcgcaccagtggtgtcccatttgttgtttgcagataattgtttcttgttttg |
86687 |
T |
|
| Q |
566 |
caaggctaatgtggtggaagcacaatgtttactcaccattcttaaaacttatgaggcatcatctggac |
633 |
Q |
| |
|
|| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
86688 |
cagggccaatgtggtggaagcacaacgtttactcactattcttaaaacttatgaggcagcatctggac |
86755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 43448283 - 43448494
Alignment:
| Q |
15 |
ctatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagcagtcagc |
114 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| ||| || || |||||||||||||||| |||| | |||||||||||||||| |||||| ||| | |
|
|
| T |
43448283 |
ctatatctctttgtaatattttgtataagatggtgtcgaatttactcgctaatcgactgaaacattgtcttgataaatgtgtgtcaggggagcaatcatc |
43448382 |
T |
|
| Q |
115 |
gtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgaggggaattggct |
214 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| | |||||| ||||| | |||| |||||| |||||||| ||||||||||||||| ||||||||||| || |
|
|
| T |
43448383 |
gtttatcgagggccgctccatactagacaacacattaatagctaccaaaataacccactcaatgaagagaaagacgaagggatggagaggggaattgact |
43448482 |
T |
|
| Q |
215 |
ctcaagattgat |
226 |
Q |
| |
|
||| | |||||| |
|
|
| T |
43448483 |
ctcgatattgat |
43448494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 509
Target Start/End: Original strand, 43448499 - 43448710
Alignment:
| Q |
296 |
tgagaaatggatctagtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgaggg |
395 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||| | ||||| |||||||||| |||||||||||| |||||| |||| ||||||||||| ||||| |
|
|
| T |
43448499 |
tgagaaattgattgagtggatgatgatgtgt--taggtatgttatttattcggtgtttatgaactttggtagggtgatgcctattgtacccggctgaggg |
43448596 |
T |
|
| Q |
396 |
ttgcaccagggtgacccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatg |
495 |
Q |
| |
|
||| || |||||| |||| | |||||||||| |||||||||||||||||||||| ||||||||| |||||| | |||||||||| |||||||||| |
|
|
| T |
43448597 |
ttgtgtcatggtgacatgttatcatcatatttatttatattggtggatgagggcctcttaactctaatgcataagacggttaatatagaagatattcatg |
43448696 |
T |
|
| Q |
496 |
gaatacaagtatgt |
509 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43448697 |
atatacaagtatgt |
43448710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 616
Target Start/End: Complemental strand, 51262054 - 51261461
Alignment:
| Q |
11 |
agacctatatccctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagcagt |
110 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||| |||||||| | |||||||||||| || |||||||||||||| ||||||||||| |||| |
|
|
| T |
51262054 |
agacctatatctctttgtaatgtgttatataagatggtgtcaaagttgctcgttaatcgactgaatcgatgtttggataaatgcgtgtcagaggaacagt |
51261955 |
T |
|
| Q |
111 |
cagcgtttgtcgagggccgtttcatactagacaacgcgttaataactaccgagataatccactcgatgaagaggaagacgaagggatggcgaggggaatt |
210 |
Q |
| |
|
|||||||| |||||||||||| ||| | |||||| ||||||| |||| ||||||| ||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
51261954 |
cagcgtttatcgagggccgttctatattggacaacatgttaatagctactgagataactcactcaatgaagaggaagacaaagggatggagaggggaatt |
51261855 |
T |
|
| Q |
211 |
ggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatcta |
310 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||| |||||||||| ||||||||||| | |||||||||||| | |
|
|
| T |
51261854 |
gactctcaagattgatattagcaaggcttatgatagagtggatt-gggggtttcttcgtgatgtgcttatgtgaatggggttcgaagagaaatggatcca |
51261756 |
T |
|
| Q |
311 |
gtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtgac |
410 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||||| |
|
|
| T |
51261755 |
gtggatgatgatgtgtgttagttttgtta-----------cttatgtactttgacagggtggggcctattgtacccggtcgagggttgcgccaaggtgac |
51261667 |
T |
|
| Q |
411 |
ccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtatgtc |
510 |
Q |
| |
|
|| |||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| | |||||||||||| || ||||||||||| |
|
|
| T |
51261666 |
ccgttatcaccatatttattcatattggtggccgagagcctctcgactctaatacataaggcagttaacagaggtgatattcacggggtacaagtatgtt |
51261567 |
T |
|
| Q |
511 |
acggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattcttaa |
610 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
51261566 |
gcggtgcaccagtggtgtcccatctgttgtttgcagacgattgtttcttgttttgcagggccaatgtggtggaagcacaacatttactcgctattcttag |
51261467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 311 - 434
Target Start/End: Complemental strand, 3607919 - 3607796
Alignment:
| Q |
311 |
gtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtgac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||| |
|
|
| T |
3607919 |
gtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgatagggtggggtctattgtacccggccgagggttgctccagggtgac |
3607820 |
T |
|
| Q |
411 |
ccattattaccatatttattcata |
434 |
Q |
| |
|
|| |||| | |||||||||||||| |
|
|
| T |
3607819 |
cctttatcatcatatttattcata |
3607796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 633
Target Start/End: Complemental strand, 3607799 - 3607631
Alignment:
| Q |
465 |
cataaggcagttaatataggtgatattcatggaatacaagtatgtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgtttt |
564 |
Q |
| |
|
||||||||| ||||| |||| || |||||| ||||||| |||| ||||| | |||||||||| || || ||||| |||| |||||||||||||||| |
|
|
| T |
3607799 |
cataaggcatttaatggaggtattaatcatggggtacaagtttgtcgtggtgctctagtggtgtcccatatgctgttttcagatgattgtttcttgtttt |
3607700 |
T |
|
| Q |
565 |
gcaaggctaatgtggtggaagcacaatgtttactcaccattcttaaaacttatgaggcatcatctggac |
633 |
Q |
| |
|
||| ||| |||||| | ||| ||||| |||||||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
3607699 |
gcagggcaaatgtgattgaaccacaacgtttactcactattctccaaacttatgagacaacatctggac |
3607631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 227 - 633
Target Start/End: Complemental strand, 15608142 - 15607740
Alignment:
| Q |
227 |
attaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatctagtggatgatgatgtgt |
326 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15608142 |
attagcaaggcttatgatagagtggattggggg-tttcttcgtggtgtgcttatgagaatggggttcaatgagaaatggatctagtggatgatg---tgt |
15608047 |
T |
|
| Q |
327 |
gttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtgacccattattaccatatt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||| | |||| || |||| |||||||| |
|
|
| T |
15608046 |
gttagttctgttacttattcggtgcttatgaactttgatagggtgggacctattgtacccggctgagggttgcgttaatgtgatccgttatcaccatatt |
15607947 |
T |
|
| Q |
427 |
tattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtatgtcacggtgcaccagtggt |
526 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||| ||||| |
|
|
| T |
15607946 |
tattcatattggtggttgagggcctatcgactctaatacataaggcagttcatataggtgatattcatggggtacaagtatgtcgcggcgcacctgtggt |
15607847 |
T |
|
| Q |
527 |
gtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattcttaaaacttatgaggcatca |
626 |
Q |
| |
|
|||| || |||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||| || |||||||||| ||| |||||| || |
|
|
| T |
15607846 |
gtcccatatgttgtttgcagacgattatttcttgttttgccgggttaatgtggtggaggcacaatgtttacttactattcttaaaatttacgaggcagca |
15607747 |
T |
|
| Q |
627 |
tctggac |
633 |
Q |
| |
|
||||||| |
|
|
| T |
15607746 |
tctggac |
15607740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 391 - 619
Target Start/End: Complemental strand, 19365959 - 19365731
Alignment:
| Q |
391 |
gagggttgcaccagggtgacccattattaccatatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatat |
490 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
19365959 |
gagggttgcgccagggtgacccattatcaccatatttattcatattggtggttgagggtctctcgactctaatacataaggtagttaatatagatgatat |
19365860 |
T |
|
| Q |
491 |
tcatggaatacaagtatgtcacggtgcaccagtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaa |
590 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
19365859 |
tcatggggtacaagtatgtagcggcgcaccagtggtgtcccacctgttgtttgcagacgattgtttcttgttttgcagggccaatgtggttgaagcacaa |
19365760 |
T |
|
| Q |
591 |
tgtttactcaccattcttaaaacttatga |
619 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
19365759 |
catttactcattattcttaaaacttatga |
19365731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 221 - 496
Target Start/End: Complemental strand, 11733780 - 11733506
Alignment:
| Q |
221 |
attgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaatggatctagtggatgatg |
320 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||| || |||| ||||||||||||| ||||| | ||||||| |||| ||||||||||||| | || |||||| |
|
|
| T |
11733780 |
attgatattagcaagacttatgatagagtggattcgggg-tttcttcgtggtgggcttaagtgaatgggattcagtgagaaatggatccactgaatgatg |
11733682 |
T |
|
| Q |
321 |
atgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggggcctgttgtacccggccgagggttgcaccagggtgacccattattac |
420 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || |||||| || | ||||||||||||||||| |||| || |
|
|
| T |
11733681 |
atgtgtgttagttatgttacttattcggtgcttatgaactttgatagggtggggactattatacccgaccttgaattgcaccagggtgacccgttatcac |
11733582 |
T |
|
| Q |
421 |
catatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatgg |
496 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||| |||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11733581 |
catatttattcatattggtggctgagagactctctactctaatacataaggcaattaatagaggtgatattcatgg |
11733506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 537 - 633
Target Start/End: Complemental strand, 11733486 - 11733390
Alignment:
| Q |
537 |
ttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattcttaaaacttatgaggcatcatctggac |
633 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| | ||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
11733486 |
ttgtttgcaaacgattgtttcttgttttgcagggccagtgtggtggaagcacatcgtttactcactattcttaaaatttatgaggcaacatctggac |
11733390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 11733931 - 11733781
Alignment:
| Q |
23 |
ctttgtaatgttttgtataagatggtgttgaagttgcttgctaatcgactgaaacgttgtttggataaatgtgtgtcagaggagcagtcagcgtttgtcg |
122 |
Q |
| |
|
||||||||||| ||||| || ||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| | | |
|
|
| T |
11733931 |
ctttgtaatgtgttgtacaaaatggtgtcaaagttgctcgctgatcgactgaaatagtgtttggataaatgtgtgtcagaggagcagtcaacgttttttg |
11733832 |
T |
|
| Q |
123 |
agggccgtttcatactagacaacgcgttaataactaccgagataatccact |
173 |
Q |
| |
|
| |||| | |||| | ||||| || |||||| |||| ||||||||||||| |
|
|
| T |
11733831 |
aaggcctctccatattggacaatgcattaatagctactgagataatccact |
11733781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 373
Target Start/End: Original strand, 22419430 - 22419492
Alignment:
| Q |
311 |
gtggatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtggg |
373 |
Q |
| |
|
|||||||||||| |||||||||||| | || || |||||||||||||| |||||||| ||||| |
|
|
| T |
22419430 |
gtggatgatgatatgtgttagttctatcacatactcggtgcttatgaattttgacagagtggg |
22419492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Complemental strand, 19366096 - 19366065
Alignment:
| Q |
299 |
gaaatggatctagtggatgatgatgtgtgtta |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19366096 |
gaaatggatctagtggatgatgatgtgtgtta |
19366065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 7e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 421 - 631
Target Start/End: Original strand, 24250893 - 24251100
Alignment:
| Q |
421 |
catatttattcatattggtggatgagggcctctcaactctaatacataaggcagttaatataggtgatattcatggaatacaagtatgtcacggtgcacc |
520 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
24250893 |
catatttattcatattagtggtcgagggccactcaactctaatacataaaacagttaatagaggtgatattcatggggtacaa---tgtcgcggtgcacc |
24250989 |
T |
|
| Q |
521 |
agtggtgtcctatctgttgtttgcagacgattgtttcttgttttgcaaggctaatgtggtggaagcacaatgtttactcaccattcttaaaacttatgag |
620 |
Q |
| |
|
||| |||||| || |||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
24250990 |
agtagtgtcccatttgttgtttacagacgattgttttttgttttgcagggccaatgtggtggaagcacaacgtttactcactattcttaaaacttatgag |
24251089 |
T |
|
| Q |
621 |
gcatcatctgg |
631 |
Q |
| |
|
| | ||||||| |
|
|
| T |
24251090 |
gtagcatctgg |
24251100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 24250681 - 24250820
Alignment:
| Q |
203 |
ggggaattggctctcaagattgatattaacaaggcttatgataaagtgggttggggggtttcttcgtggtgtgcttatgcgaatggggttcaatgagaaa |
302 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||| ||||| |||||| |||||||| | ||||||||| |||||||||||| ||||||| |
|
|
| T |
24250681 |
ggggaattgactctcaagattgatattagcaaagcttatgatagagtggattgggg-gtttcttccggacgtgcttatgtgaatggggttcagtgagaaa |
24250779 |
T |
|
| Q |
303 |
tggatctagtggatgatgatgtgtgttagttctgttactta |
343 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24250780 |
tggattcagtggatgatggcgtgtgttagttttgttactta |
24250820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 24250893 - 24250836
Alignment:
| Q |
314 |
gatgatgatgtgtgttagttctgttacttattcggtgcttatgaactttgacagggtg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
24250893 |
gatgatgatgtgtgttagttctgttacttactcagtgcttatgaactttgacagggtg |
24250836 |
T |
|
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