View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279-Insertion-5 (Length: 380)
Name: NF1279-Insertion-5
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 23071465 - 23071837
Alignment:
| Q |
8 |
atagcatgattaactatatgctcatcaatatacaattatatatcttataatacaatttgttccnnnnnnn-caatttttggaaacaatgacaccgaatga |
106 |
Q |
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| T |
23071465 |
atagcatgattaactatatgcacatcaatatacaattatatatcttataatacaatttcatccaaaaaaaacaatttttggaaacaatgagaccgaatga |
23071564 |
T |
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| Q |
107 |
aaactaactatctgtcgaacataccaatctaacaaaaattcgaaactactgcatatgtaacagagaagtaagggaaatttctagatgcataacttactat |
206 |
Q |
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| T |
23071565 |
aaactaactatcagtcgaacataccaatctaacaaaaattagaaactactgcatatgtaacacagaagtaagggaaatttctagatgcataacttactat |
23071664 |
T |
|
| Q |
207 |
ggattagggaataattgattttaaaggactatggaatacttagcaatattaagaaataggcaggcacacatgcacttacacaaaatttgattgcaagttg |
306 |
Q |
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| T |
23071665 |
ggattagggaataattgattttaaaggactatggaatacttagcaatattaagaaataggcaggcacacatgcacttacacaaaatttgattgccagttg |
23071764 |
T |
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| Q |
307 |
caaccataccatcatctactaaaatcgaaatatcaaacttcaaaattgtgacacatttgagttgcatcattga |
379 |
Q |
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| T |
23071765 |
caaccataccatcatctactaaaatcgaaatatcaaacttcaaaattgtgacacatttgagttgcatcattga |
23071837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 23059507 - 23059431
Alignment:
| Q |
127 |
ataccaatctaacaaaaattcgaaactactgcatatgtaacagagaagtaagggaaatttctagatgcataacttacta |
205 |
Q |
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| T |
23059507 |
ataccaatccaacaaaaattggaaactagttcatatgtaacata--agtgagggaaatttttagatgcataacttacta |
23059431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 23095897 - 23095943
Alignment:
| Q |
333 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattga |
379 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23095897 |
gaaacatcaaacttcaaaattgtgacacatttgaaatgcatcattga |
23095943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 23127592 - 23127638
Alignment:
| Q |
333 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattga |
379 |
Q |
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|||| ||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
23127592 |
gaaacatcaaactttaaaattgtgacacatttgagctgcatcattga |
23127638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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