View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12790_high_1 (Length: 521)
Name: NF12790_high_1
Description: NF12790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12790_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 505
Target Start/End: Original strand, 41656862 - 41657379
Alignment:
| Q |
6 |
agaagcaaaggaagagaaagaacttttgttgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacacc-- |
103 |
Q |
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| T |
41656862 |
agaaacaaaggaagagaaagaacttttgctgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacaccac |
41656961 |
T |
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| Q |
104 |
-tttcacacaaagaataaaaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaaccgtctaattttccctaaccaatttcccat |
202 |
Q |
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| T |
41656962 |
ctttcacacaaaaaataaaaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaactgtttaattttccctaaccaatttcccat |
41657061 |
T |
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| Q |
203 |
ctctataaaccaccaacgttatttctgtgct-----atttattccaaccactcagcagctagtatgaaaggatt------atccagaagtccagacctaa |
291 |
Q |
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| T |
41657062 |
ctctataaaccgccaacgttatttgtgtgctatttaatttattccaaccactcagcagctagtatgaaaggattatccagatccagaagtccagacctaa |
41657161 |
T |
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| Q |
292 |
ctttgaccttattgtatgcaagttaggcatgtttggaatccatcaattaaatgtc----accaaccatacataacatataagtatctcagatcacagcag |
387 |
Q |
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| T |
41657162 |
ctttgaccttattgtatgcaagttaggcatgtttggaatccatcaattaaatgtcaccaaccaaccatacataacatataagtttctcagatcacagcag |
41657261 |
T |
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| Q |
388 |
aagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatcgcagtcaaccatagttcaaaactgagcacggtaacag |
487 |
Q |
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| T |
41657262 |
aagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatcgcagtcaaccatagttcaaaactgagcacggtaacag |
41657361 |
T |
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| Q |
488 |
aaattgctaggtctaagg |
505 |
Q |
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| T |
41657362 |
aaattgctagttctaagg |
41657379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 41658382 - 41658467
Alignment:
| Q |
363 |
atataagtatctcagatcacagcagaagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccaca |
448 |
Q |
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| T |
41658382 |
atataagtatcacagatcaaagcagaagtagaaatatatcatatcacatatcaatcatattttacatacattgaaagacaaccaca |
41658467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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