View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12790_high_3 (Length: 378)
Name: NF12790_high_3
Description: NF12790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12790_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 148 - 362
Target Start/End: Complemental strand, 9069592 - 9069379
Alignment:
| Q |
148 |
tggagtatttatgaacagtacatatacggtgttgtatttgtgtgaacaaatttgtgtttgtttatcatttatattaattttaaggatccaaaaggttaca |
247 |
Q |
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| T |
9069592 |
tggagtatttatgaacagtacatatacggagttgtatttgtgtcaacaaatttgtgtttgtttatcatttatattaattttaaggatctaaaaggttaca |
9069493 |
T |
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| Q |
248 |
ttggccaccattatatggtatctgaattctctacctttcaattatctttatttaatatatttttctcaatctttctcagaatcaatcattttctcgcatc |
347 |
Q |
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| T |
9069492 |
ttggccaccattatatgggatctgaattctctacctttcaatcatctgtatttaatatatttctctcaatctttctcgtaatcaatcattttcttgcatc |
9069393 |
T |
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| Q |
348 |
taaataatttatttt |
362 |
Q |
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| T |
9069392 |
taaat-atttatttt |
9069379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 9069727 - 9069648
Alignment:
| Q |
13 |
gcataggatagtggagttgataacggtggacgatggccggagatcggagttgcataaaaaagggaggtggtcgtgaatga |
92 |
Q |
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| T |
9069727 |
gcataggatagtggagttgataacggtggacgatggctggagatcggagttgcagaaaaaagggaggtggtcgtgaatga |
9069648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 8446041 - 8446005
Alignment:
| Q |
181 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
217 |
Q |
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| T |
8446041 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8446005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 8454845 - 8454809
Alignment:
| Q |
181 |
gtatttgtgtgaacaaatttgtgtttgtttatcattt |
217 |
Q |
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| T |
8454845 |
gtatttgtgtcaaaaaatttgtgtttgtttatcattt |
8454809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 53176860 - 53176895
Alignment:
| Q |
327 |
aatcaatcattttctcgcatctaaataatttatttt |
362 |
Q |
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| T |
53176860 |
aatcaatcattttctctcatctaaataatttatttt |
53176895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 33445874 - 33445840
Alignment:
| Q |
327 |
aatcaatcattttctcgcatctaaataatttattt |
361 |
Q |
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| T |
33445874 |
aatcaatcattttctctcatctaaataatttattt |
33445840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 45716264 - 45716305
Alignment:
| Q |
176 |
gtgttgtatttgtgtgaacaaatttgtgtttgtttatcattt |
217 |
Q |
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| T |
45716264 |
gtgttgtatttgtgtcaaataatttgtgtttgtttatcattt |
45716305 |
T |
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