View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12790_high_7 (Length: 246)
Name: NF12790_high_7
Description: NF12790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12790_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 1241719 - 1241507
Alignment:
| Q |
17 |
aattagtgctagagtttggaattatatgcttaattggatcctttgttggtgctgcagttctgcaggttttggagctaaattgagttgtgttttaccgcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||||||| ||||||||||||| || || |
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| T |
1241719 |
aattagtgctagagtttggaattatatgcttaatcggatcctttgttggtgttgaagttctccaggttttggagctaaatcgagttgtgttttaacgtat |
1241620 |
T |
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| Q |
117 |
aattatgcaaacttttgtatctaaactgtttttgtaggcacctcctttacggtttgttataactgtgttaggctgtgaattgttggatgttagtaatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241619 |
aattatgcaaacttttgtatctaaactgtttttgtaggcacctcctttacggtttgttataactgtgttaggctgtgaattgttggatgttagtaatgaa |
1241520 |
T |
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| Q |
217 |
acacttgctcttg |
229 |
Q |
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||||||||||||| |
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| T |
1241519 |
acacttgctcttg |
1241507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 41527002 - 41527211
Alignment:
| Q |
17 |
aattagtgctagagtttggaattatatgcttaattggatcctttgttggtgctgcagttctgcaggttttggagctaaattgagttgtgttttaccgcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41527002 |
aattagtgctagagtttggaattatatgcttaatcagatcctttgttagtgctgcaattctgcaggttttggagctaaattgagttgtgttttaccgcat |
41527101 |
T |
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| Q |
117 |
aattatgcaaacttttgtatctaaactgtttttgtaggcacctcctttacggtttgttataactgtgttaggctgtgaattgttggatgttagtaatgaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
41527102 |
aattatgcaaacttttgtatctaaactgtttttgtaggca---cctttacggtttgttataactatattagactgtgaattgttggatgttagtaatgaa |
41527198 |
T |
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| Q |
217 |
acacttgctcttg |
229 |
Q |
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||||||| ||||| |
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| T |
41527199 |
acacttggtcttg |
41527211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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