View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12790_low_6 (Length: 277)
Name: NF12790_low_6
Description: NF12790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12790_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 12076135 - 12075875
Alignment:
| Q |
1 |
ccaattgaagttaaagatgagcaatcaaaaactacgatcagagtttgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12076135 |
ccaattgaagttaaagatgagcaatcaaaaactacgataagagtttgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaa |
12076036 |
T |
|
| Q |
101 |
attaatttctcaaatccaaaaagtagattgcagctcaatgaaacgacattagtttgagttgaatcaacgaagaaaatgaagagnnnnnnngggatcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12076035 |
attaatttctcaaatccaaaaagtagattgcagctcaatgaaacgacattcgtttgagttgaatcaacgaagaaaatgaagagaaaaaaagggatcaaag |
12075936 |
T |
|
| Q |
201 |
ttgtgatgtctnnnnnnnnttgaactttttaaactgtcaatgctactactcaagcaccaac |
261 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12075935 |
ttgtgacgtctaaaaaaaattgaactttttaaactgtcaatgctactgctcaagcaccaac |
12075875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12054265 - 12054058
Alignment:
| Q |
1 |
ccaattgaagttaaagatgagcaatcaaaaactacgatcagagtttgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12054265 |
ccaattgaagttaaagatgaacaatcaaaaactacgattatagttggcatagttcggacctttaagtatgtctaaaccattagggtttgcaaatgatgaa |
12054166 |
T |
|
| Q |
101 |
attaatttctcaaatccaaaaagtaga-ttgcagctcaatgaaacgacattagtttgagttgaatcaacgaagaaaatgaagagnnnnnnngggatcaaa |
199 |
Q |
| |
|
||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12054165 |
attaaattctcaaatccaagaagtagagtagcagctcaatgaaacgacattagtttgagctgaatcaacgaagaaaatgaagagaaaaaaagggatcaaa |
12054066 |
T |
|
| Q |
200 |
gttgtgat |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
12054065 |
gttgtgat |
12054058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 12074738 - 12074551
Alignment:
| Q |
1 |
ccaattgaagttaaagatgagcaatcaaaaactacgatcagagtttgcatagttcagacctttaaatat-------gtctaaaccattagggtttgcaaa |
93 |
Q |
| |
|
|||||||||| |||||| || |||||| |||| ||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
12074738 |
ccaattgaaggtaaagaagaacaatcagaaaccacgattagagtttgcatagttcagacctttaagtatgtctaaagtctaaaccattatggtttgcaaa |
12074639 |
T |
|
| Q |
94 |
tgatgaaattaatttctcaaatccaaaaagtag-attgcagctcaatgaaacgacattagtttgagttgaatcaacgaagaaaatgaagag |
183 |
Q |
| |
|
||||||||| ||||||| |||||| | |||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
12074638 |
tgatgaaatgaatttctaaaatcc---atgtagaattgcaactcaatgaaacgacattagtttgagctgaatcaacaaagaaaatgaagag |
12074551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 12059526 - 12059453
Alignment:
| Q |
46 |
tgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa |
119 |
Q |
| |
|
||||||||||| | || | | ||||||| ||||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
12059526 |
tgcatagttcacatctctgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaa |
12059453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 12064896 - 12064823
Alignment:
| Q |
46 |
tgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa |
119 |
Q |
| |
|
|||||| |||| | |||| | ||||||| ||||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
12064896 |
tgcatatttcacatctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttctaaaatccaa |
12064823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 12074510 - 12074476
Alignment:
| Q |
220 |
ttgaactttttaaactgtcaatgctactactcaag |
254 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
12074510 |
ttgaactttttaaactgtgaatgctactactcaag |
12074476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 5593000 - 5593073
Alignment:
| Q |
46 |
tgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa |
119 |
Q |
| |
|
||||||||||| |||||| | ||||||| |||||||| ||| ||||||| || ||| ||||||||||| |||| |
|
|
| T |
5593000 |
tgcatagttcacacctttgagtatgtctgaaccattaatgttcgcaaatggtggaatgaatttctcaaaaccaa |
5593073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 12052107 - 12052034
Alignment:
| Q |
46 |
tgcatagttcagacctttaaatatgtctaaaccattagggtttgcaaatgatgaaattaatttctcaaatccaa |
119 |
Q |
| |
|
|||||| |||| |||||| | || ||||||||||||| |||||||||||||| ||| ||| ||| |||||||| |
|
|
| T |
12052107 |
tgcataattcacacctttgagaatatctaaaccattagtgtttgcaaatgatggaatgaatatctaaaatccaa |
12052034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University