View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12790_low_7 (Length: 260)
Name: NF12790_low_7
Description: NF12790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12790_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 13231945 - 13231696
Alignment:
| Q |
11 |
cacagacacgtgttagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaagg |
110 |
Q |
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| T |
13231945 |
cacagacacgtggtagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggaggagataattttgaagg |
13231846 |
T |
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| Q |
111 |
ttgaaataaaaaccacttactgataagccaagctgctcaataagcttctcaactctctgcctcttatcaacggctgaaagtggccctaatctgaaatcag |
210 |
Q |
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| T |
13231845 |
ttgaaataaaaaccacttactgataagccaagctgctcaataagcttctcaactctctgcctcttatcaacagctgaaagtggccctaatctgaaatcag |
13231746 |
T |
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| Q |
211 |
cagcaaacatcaaagtctcatagacggtaagcataggaaaaagcctatct |
260 |
Q |
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| T |
13231745 |
cagcaaacatcaaagtctcatagacagtaagcataggaaaaagcctatct |
13231696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 13232178 - 13232059
Alignment:
| Q |
14 |
agacacgtgttagccactagacacgacttcaatctaaggtgtcttgtctatatagttagtgacagatattagtacatggag-ga-gataattttgaaggt |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||| |
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| T |
13232178 |
agacacgtgttagacactagacacgacttcaatctaagatgtcttgtgtatatagttagtgac--atattagtacatggagagatcataattttgaaggt |
13232081 |
T |
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| Q |
112 |
tgaaataaaaaccacttactgata |
135 |
Q |
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| T |
13232080 |
tgaa--aaaaaacacttactgata |
13232059 |
T |
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