View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12791_high_6 (Length: 277)

Name: NF12791_high_6
Description: NF12791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12791_high_6
NF12791_high_6
[»] scaffold0028 (3 HSPs)
scaffold0028 (145-277)||(63626-63758)
scaffold0028 (156-277)||(87534-87654)
scaffold0028 (233-277)||(63748-63791)
[»] chr6 (16 HSPs)
chr6 (146-274)||(17378246-17378373)
chr6 (146-274)||(18913359-18913486)
chr6 (146-277)||(28104347-28104477)
chr6 (146-277)||(2200884-2201015)
chr6 (146-277)||(22420658-22420789)
chr6 (179-277)||(19399361-19399458)
chr6 (149-277)||(15688076-15688204)
chr6 (146-277)||(19953589-19953720)
chr6 (145-255)||(15874992-15875102)
chr6 (169-277)||(18927397-18927506)
chr6 (148-255)||(15174697-15174804)
chr6 (156-277)||(16885742-16885862)
chr6 (227-277)||(22420806-22420855)
chr6 (233-277)||(22420845-22420888)
chr6 (230-277)||(19953523-19953569)
chr6 (233-277)||(19953358-19953401)
[»] chr4 (16 HSPs)
chr4 (146-274)||(26013027-26013154)
chr4 (146-274)||(14747225-14747352)
chr4 (146-274)||(21102832-21102959)
chr4 (146-277)||(9922914-9923044)
chr4 (154-255)||(15884655-15884756)
chr4 (146-274)||(15481751-15481878)
chr4 (145-255)||(40619366-40619476)
chr4 (145-255)||(15007824-15007934)
chr4 (146-277)||(15876941-15877072)
chr4 (146-277)||(11480043-11480173)
chr4 (156-253)||(10696362-10696459)
chr4 (156-253)||(10910131-10910228)
chr4 (166-277)||(14184664-14184773)
chr4 (213-274)||(54604925-54604985)
chr4 (163-272)||(12841208-12841316)
chr4 (233-277)||(14184796-14184839)
[»] chr3 (20 HSPs)
chr3 (146-274)||(24180553-24180680)
chr3 (163-274)||(11914563-11914673)
chr3 (169-274)||(24513412-24513516)
chr3 (146-274)||(35962271-35962398)
chr3 (146-277)||(52990152-52990282)
chr3 (146-277)||(14965712-14965842)
chr3 (146-277)||(6807928-6808059)
chr3 (154-277)||(17692168-17692290)
chr3 (145-255)||(14871349-14871459)
chr3 (145-255)||(16978798-16978908)
chr3 (145-255)||(22651641-22651751)
chr3 (154-277)||(17685945-17686067)
chr3 (166-277)||(36527431-36527540)
chr3 (179-274)||(49970569-49970663)
chr3 (163-277)||(15061432-15061544)
chr3 (166-255)||(3265292-3265380)
chr3 (183-277)||(21837092-21837185)
chr3 (181-277)||(13520891-13520986)
chr3 (182-277)||(13523620-13523714)
chr3 (233-277)||(13436002-13436045)
[»] chr2 (13 HSPs)
chr2 (146-274)||(34492763-34492890)
chr2 (154-274)||(13101939-13102058)
chr2 (146-274)||(24917461-24917588)
chr2 (146-277)||(27472028-27472158)
chr2 (146-270)||(23707965-23708087)
chr2 (145-255)||(21082281-21082391)
chr2 (145-255)||(27485536-27485646)
chr2 (146-277)||(24680862-24680992)
chr2 (146-277)||(24316477-24316607)
chr2 (146-277)||(24670411-24670541)
chr2 (146-277)||(34874660-34874790)
chr2 (146-255)||(18359302-18359411)
chr2 (212-274)||(23707899-23707960)
[»] scaffold0599 (1 HSPs)
scaffold0599 (163-274)||(6280-6390)
[»] scaffold0561 (2 HSPs)
scaffold0561 (146-277)||(10179-10304)
scaffold0561 (233-277)||(10294-10337)
[»] scaffold0436 (1 HSPs)
scaffold0436 (146-274)||(7636-7763)
[»] scaffold0022 (1 HSPs)
scaffold0022 (146-274)||(54352-54479)
[»] chr8 (13 HSPs)
chr8 (154-274)||(19879281-19879400)
chr8 (146-276)||(22238466-22238595)
chr8 (145-274)||(26453734-26453862)
chr8 (146-277)||(23409305-23409435)
chr8 (163-277)||(12576710-12576823)
chr8 (183-277)||(32807092-32807185)
chr8 (146-255)||(23477879-23477988)
chr8 (145-255)||(17461542-17461652)
chr8 (154-255)||(14103439-14103540)
chr8 (146-206)||(16402147-16402207)
chr8 (158-277)||(18024772-18024890)
chr8 (233-277)||(12576813-12576856)
chr8 (233-277)||(19879618-19879661)
[»] chr7 (25 HSPs)
chr7 (146-274)||(8939743-8939870)
chr7 (146-277)||(15112444-15112574)
chr7 (146-271)||(14981954-14982078)
chr7 (146-277)||(15116016-15116146)
chr7 (146-277)||(14157428-14157558)
chr7 (146-277)||(37793838-37793968)
chr7 (146-277)||(46581058-46581188)
chr7 (147-255)||(16551202-16551310)
chr7 (147-255)||(16614352-16614460)
chr7 (148-277)||(16998147-16998275)
chr7 (146-273)||(11084680-11084806)
chr7 (146-277)||(12556500-12556630)
chr7 (163-277)||(15719643-15719756)
chr7 (156-277)||(1490650-1490770)
chr7 (146-255)||(9320777-9320887)
chr7 (145-277)||(14272950-14273077)
chr7 (155-227)||(16323642-16323714)
chr7 (158-277)||(14416611-14416729)
chr7 (146-219)||(10501958-10502031)
chr7 (146-277)||(32161224-32161346)
chr7 (146-238)||(11092432-11092524)
chr7 (227-277)||(12556712-12556761)
chr7 (224-277)||(34957083-34957135)
chr7 (227-255)||(16551150-16551178)
chr7 (227-255)||(16614484-16614512)
[»] scaffold1508 (1 HSPs)
scaffold1508 (146-274)||(51-178)
[»] chr1 (21 HSPs)
chr1 (146-277)||(12271120-12271250)
chr1 (146-277)||(8881881-8882012)
chr1 (146-277)||(22357284-22357414)
chr1 (146-277)||(25263454-25263584)
chr1 (146-255)||(22358970-22359079)
chr1 (145-255)||(10492430-10492540)
chr1 (146-255)||(23072572-23072681)
chr1 (146-255)||(46198780-46198889)
chr1 (145-255)||(21740228-21740338)
chr1 (145-255)||(27653669-27653776)
chr1 (163-277)||(13513530-13513643)
chr1 (146-255)||(51326356-51326465)
chr1 (146-211)||(20315666-20315731)
chr1 (146-227)||(20315883-20315964)
chr1 (227-277)||(23072719-23072768)
chr1 (230-277)||(13513630-13513676)
chr1 (146-177)||(29764699-29764730)
chr1 (227-277)||(21740141-21740190)
chr1 (227-277)||(25263388-25263437)
chr1 (233-277)||(11809601-11809644)
chr1 (233-277)||(25263290-25263333)
[»] scaffold0153 (1 HSPs)
scaffold0153 (146-277)||(10213-10343)
[»] scaffold0014 (4 HSPs)
scaffold0014 (146-277)||(126569-126699)
scaffold0014 (146-277)||(77428-77558)
scaffold0014 (233-277)||(77581-77624)
scaffold0014 (233-277)||(77614-77657)
[»] scaffold0076 (1 HSPs)
scaffold0076 (145-277)||(26656-26787)
[»] chr5 (11 HSPs)
chr5 (146-277)||(35852352-35852483)
chr5 (145-255)||(17010521-17010631)
chr5 (146-277)||(24212049-24212180)
chr5 (146-274)||(41861982-41862109)
chr5 (145-255)||(27767929-27768039)
chr5 (146-255)||(6765371-6765480)
chr5 (145-255)||(262722-262832)
chr5 (207-277)||(29447640-29447709)
chr5 (146-201)||(20299175-20299230)
chr5 (145-214)||(30138976-30139045)
chr5 (233-277)||(31252898-31252941)
[»] scaffold0335 (2 HSPs)
scaffold0335 (146-277)||(355-485)
scaffold0335 (233-277)||(508-551)
[»] scaffold0032 (1 HSPs)
scaffold0032 (146-277)||(66804-66934)
[»] scaffold0020 (1 HSPs)
scaffold0020 (154-277)||(170262-170384)
[»] scaffold0877 (1 HSPs)
scaffold0877 (145-277)||(3205-3336)
[»] scaffold0037 (2 HSPs)
scaffold0037 (146-277)||(68874-69004)
scaffold0037 (233-277)||(69060-69103)
[»] scaffold0577 (1 HSPs)
scaffold0577 (185-274)||(7388-7476)
[»] scaffold0515 (1 HSPs)
scaffold0515 (146-255)||(3861-3970)
[»] scaffold0306 (1 HSPs)
scaffold0306 (146-255)||(3861-3970)
[»] scaffold0123 (1 HSPs)
scaffold0123 (146-255)||(106-215)
[»] scaffold0104 (4 HSPs)
scaffold0104 (156-277)||(7188-7309)
scaffold0104 (156-277)||(16221-16342)
scaffold0104 (156-277)||(18241-18362)
scaffold0104 (208-275)||(13805-13872)
[»] scaffold0057 (1 HSPs)
scaffold0057 (146-255)||(70934-71043)
[»] scaffold0004 (3 HSPs)
scaffold0004 (145-255)||(362277-362387)
scaffold0004 (227-277)||(362425-362474)
scaffold0004 (233-277)||(362464-362507)
[»] scaffold0356 (1 HSPs)
scaffold0356 (154-255)||(876-977)
[»] scaffold0175 (1 HSPs)
scaffold0175 (156-277)||(12574-12693)
[»] scaffold0017 (1 HSPs)
scaffold0017 (156-253)||(8427-8524)
[»] scaffold0434 (1 HSPs)
scaffold0434 (146-277)||(7388-7518)
[»] scaffold0156 (1 HSPs)
scaffold0156 (145-255)||(15327-15437)
[»] scaffold0462 (1 HSPs)
scaffold0462 (146-255)||(7821-7930)
[»] scaffold0025 (1 HSPs)
scaffold0025 (146-277)||(75924-76051)
[»] scaffold0125 (2 HSPs)
scaffold0125 (145-277)||(2326-2458)
scaffold0125 (233-277)||(2230-2273)
[»] scaffold1458 (1 HSPs)
scaffold1458 (146-233)||(1693-1780)
[»] scaffold0009 (1 HSPs)
scaffold0009 (156-277)||(158941-159061)
[»] scaffold1783 (1 HSPs)
scaffold1783 (238-277)||(1-39)


Alignment Details
Target: scaffold0028 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 63626 - 63758
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  63626 gacaacatgatcattaacatttcatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtac 63725  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||| ||||||||||||||||||||||||||    
T  63726 accaccacttaataatacgacaacgtaagagta 63758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 87534 - 87654
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||| ||||||||| | | | |||||||||||||||||| |  | |||||| ||||   ||||| |||| ||| ||||||| ||||||||| ||    
T  87534 cattaatatttcatggtttggcatcaacaacaacttcaacgattcgttgacgacaacatcaatatgacaatacaa-tacatgagagttcaccacctccta 87632  T
Q  256 ataatacgacaacgtaagagta 277  Q
      ||||||||||||||||||||    
T  87633 caaatacgacaacgtaagagta 87654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 63748 - 63791
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||    
T  63748 acgtaagagtacatcacctctta-taatacgacaacgtaagagta 63791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 17378373 - 17378246
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  17378373 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 17378274  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  17378273 ccacctctt-ataatacgacaacgtaaga 17378246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 18913359 - 18913486
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18913359 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 18913458  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| ||||||||||||| |||||    
T  18913459 ccacctctt-ataatacgacaacataaga 18913486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 28104477 - 28104347
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | ||||||||||||| ||||| |||||||||||||||||||    
T  28104477 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacaactacgtgagagtaca 28104378  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  28104377 ccacctctt-ataatacgacaacgtaagagta 28104347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 2200884 - 2201015
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||||||||||||||| | | |||||||||||||||||||  | | ||||||||||||| ||||||||| ||||||||||||||    
T  2200884 acaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagtac 2200983  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| ||||||||||||||||||||||    
T  2200984 accacttctt-ataatacgacaacgtaagagta 2201015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 22420658 - 22420789
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||||||||||||||| | | |||||||||||||||||||  | | |||||| |||||| ||||||||| ||||||||||||||    
T  22420658 acaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacatcaacctgacaacacagctacgtgagagtac 22420757  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||||  |||||||||||| ||||||||    
T  22420758 accacctctt-gtaatacgacaacataagagta 22420789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 19399361 - 19399458
Alignment:
Q  179 ttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||| |||||||||||| | |||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19399361 ttatcaaaaacttcaacgatccgtcaacgacaacatcaacctgacaacacaactacgtgagagtacaccacctctt-ataatacgacaacgtaagagta 19399458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 15688204 - 15688076
Alignment:
Q  149 acatgatcattaacattccatggtttgtctttatcaacaacttcaac-gattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacacc 247  Q
    |||| |||||||| ||||||||||||||| | | ||||||||||||| |||||  ||| ||||||||||||| ||||| |||||||||||||||||   |    
T  15688204 acataatcattaatattccatggtttgtcatcaacaacaacttcaaccgattcgacaacgacaacgtcaacctgacaatacaactacgtgagagtatctc 15688105  T
Q  248 acctcttaataatacgacaacgtaagagta 277  Q
    ||||||| ||||||||||||||||||||||    
T  15688104 acctctt-ataatacgacaacgtaagagta 15688076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 19953720 - 19953589
Alignment:
Q  146 acaacatgatcattaacattccatgg-tttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||| |||||||| ||||||||| |||||| | | ||||||||||||| ||||| | | ||||||||||||| ||||| ||| ||||||||||||||    
T  19953720 acaacataatcattaatattccatggctttgtcatcaacaacaacttcaacaattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtac 19953621  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| |||||| ||| |||||||||||    
T  19953620 accacctctt-ataatatgactacgtaagagta 19953589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 15874992 - 15875102
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||||||| ||||||||||| | | ||||||||||||||||||    | ||||||||||||| | ||| ||||||||||||||||||    
T  15874992 gacaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgatgacgacaacgtcaacctgtcaatacaactacgtgagagtac 15875091  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  15875092 accacctctta 15875102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 18927397 - 18927506
Alignment:
Q  169 tggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgaga--gtacaccacctcttaataatacgaca 266  Q
    ||||||||| | | ||||||||||||||||||  | | ||||||||||||  ||||||||| ||||||||||  |||||||||||||| |||||||||||    
T  18927397 tggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgacaacacagctacgtgagagtgtacaccacctctt-ataatacgaca 18927495  T
Q  267 acgtaagagta 277  Q
    |||||||||||    
T  18927496 acgtaagagta 18927506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 15174804 - 15174697
Alignment:
Q  148 aacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacacc 247  Q
    ||||||||||||||||||  |||||||||| | | ||||||||||||||||||  | | || |||||||||| | ||| |||||||| ||||||||||||    
T  15174804 aacatgatcattaacatttaatggtttgtcatcaacaacaacttcaacgattcgacgacgataacgtcaacctgtcaatacaactacatgagagtacacc 15174705  T
Q  248 acctctta 255  Q
    | ||||||    
T  15174704 atctctta 15174697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 277
Target Start/End: Complemental strand, 16885862 - 16885742
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||||| || |||||| | | ||||||||||||| ||||  | | ||||||||||| | ||||| |||||||||| ||| || ||||||||||     
T  16885862 cattaatattccttgttttgtcatcaacaacaacttcaacaattcgacgacgacaacgtcaatctgacaatacaactacgtaagattaaaccacctctt- 16885764  T
Q  256 ataatacgacaacgtaagagta 277  Q
    ||||||| |||| |||||||||    
T  16885763 ataatacaacaatgtaagagta 16885742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 22420806 - 22420855
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  22420806 acaacaacgtaagagtacaccacctctta-taatacgacaacgtaagagta 22420855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 22420845 - 22420888
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    
T  22420845 acgtaagagtacaccacctct-aataatacgacaacgtaagagta 22420888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Complemental strand, 19953569 - 19953523
Alignment:
Q  230 actacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  19953569 actacgtaagagtacaccacctctt-ataatacgacaacataagagta 19953523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 19953401 - 19953358
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||    
T  19953401 acgtaagagtacaccacctctt-ataagacgacaacgtaagagta 19953358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 26013027 - 26013154
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  26013027 acaacataatcattaatattccatggtttatctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 26013126  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  26013127 ccacctctt-ataatacgacaacgtaaga 26013154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 14747352 - 14747225
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14747352 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaaagattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 14747253  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  14747252 ccacctctt-ataatacgacaacgtaaga 14747225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 21102959 - 21102832
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  21102959 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 21102860  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| ||||||||||||| |||||    
T  21102859 ccacctctt-ataatacgacaacttaaga 21102832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 9922914 - 9923044
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||| ||||||||||| | | ||||||||||||||||||  ||| ||||||||||||  ||||||||| |||||||||||||||    
T  9922914 acaacataatcattaatatttcatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtcaacttgacaacacagctacgtgagagtaca 9923013  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  9923014 ccacctctt-ataatacgacaacgtaagagta 9923044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 15884756 - 15884655
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  15884756 atcattaatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacaaaaccacgtgagagtacaccacctct 15884657  T
Q  254 ta 255  Q
    ||    
T  15884656 ta 15884655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 15481878 - 15481751
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||| |||| | |||||| |    
T  15481878 acaacataatcattaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaaaacagctacataagagtata 15481779  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
     |||||||| |||||||||||| ||||||    
T  15481778 tcacctctt-ataatacgacaatgtaaga 15481751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 40619366 - 40619476
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| |||||    ||||||||||||||| | ||| ||||||||||||||||||    
T  40619366 gacaacatgatcattaacattccatggtttgtcttcaacaacaacttcaatgattcgaagatgacaacgtcaacctgtcaatacaactacgtgagagtac 40619465  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  40619466 accacctctta 40619476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 15007824 - 15007934
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||  | |||| |||||||||| | ||| ||||||||||||||||||    
T  15007824 gacaacatgatcattaacattccatggtttgtcatcaacaaaaacttcaacgattcgacgatgagaacgtcaacctgtcaatacaactacgtgagagtac 15007923  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  15007924 accacctctta 15007934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 15876941 - 15877072
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||| |||| |||| |||||||||| | | |||||||||||||||||||  | | ||||||||||||  ||||||||| ||||||||||||||    
T  15876941 acaacatgatctttaatattctatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacttgacaacacagctacgtgagagtac 15877040  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
     ||||||||| ||||||||||||||||||||||    
T  15877041 gccacctctt-ataatacgacaacgtaagagta 15877072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 11480173 - 11480043
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| ||| |||| ||| ||||||||||| | | |||||||||||||||||   | | ||||||||||||  ||||||||| |||||||||||||||    
T  11480173 acaacataatccttaatatttcatggtttgtcatcaacaacaacttcaacgatttgacgacgacaacgtcaacttgacaacacagctacgtgagagtaca 11480074  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  11480073 ccacctctt-ataatacgacaacgtaagagta 11480043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 10696459 - 10696362
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  10696459 cattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 10696362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 10910228 - 10910131
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  10910228 cattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 10910131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 14184664 - 14184773
Alignment:
Q  166 ccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgac 265  Q
    |||| ||||||  ||||||||||||||||||||||  ||   |||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||    
T  14184664 ccatagtttgttattatcaacaacttcaacgattcgacaca-acaacgtcaacctgacaacacagctacgtgagagtacaccacctctt-atcatacgac 14184761  T
Q  266 aacgtaagagta 277  Q
    ||||| ||||||    
T  14184762 aacgttagagta 14184773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 54604925 - 54604985
Alignment:
Q  213 gtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaaga 274  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54604925 gtcaacctgacaacacaactacgtgagagtacaccacctctt-ataatacgacaacgtaaga 54604985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 12841208 - 12841316
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    ||||||||||||||| | | |||||||||||| |||||  | | |||||||||||   || || ||||||||||||||||| |||||||||| |||||||    
T  12841208 attccatggtttgtcatcaacaacaacttcaatgattcgacgacgacaacgtcaatatgaaaatacaactacgtgagagtataccacctctt-ataatac 12841306  T
Q  263 gacaacgtaa 272  Q
    ||||||||||    
T  12841307 gacaacgtaa 12841316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 14184796 - 14184839
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| || |||||||||||||||||||    
T  14184796 acgtaagagtacaccacctctt-atcatacgacaacgtaagagta 14184839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 24180680 - 24180553
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  24180680 acaacataatcattaatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 24180581  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  24180580 ccacctctt-ataatacgacaacgtaaga 24180553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 11914673 - 11914563
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  11914673 attccatggtttgtctttatcaacaacttcaacgattcatcaacaacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt-ataatac 11914575  T
Q  263 gacaacgtaaga 274  Q
    ||||||||||||    
T  11914574 gacaacgtaaga 11914563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 24513412 - 24513516
Alignment:
Q  169 tggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaac 268  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||    
T  24513412 tggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacct-tttataatacgacaac 24513510  T
Q  269 gtaaga 274  Q
    ||||||    
T  24513511 gtaaga 24513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 35962398 - 35962271
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  ||| ||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  35962398 acaacatattcaataatatttcatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaagctgacaacacaactacgtgagagtaca 35962299  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| ||| |||||||||||||||    
T  35962298 ccacctctt-atagtacgacaacgtaaga 35962271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 52990282 - 52990152
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | |||||||||||||  |||| ||| |||||||||||||||    
T  52990282 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaaccttacaatacagctacgtgagagtaca 52990183  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  52990182 ccacctctt-ataatacgacaacgtaagagta 52990152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 14965712 - 14965842
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | ||||||||||||| ||||| |||  ||||||||||||||    
T  14965712 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagttacgtgagagtaca 14965811  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||| ||||||||||||||    
T  14965812 ccacctctt-ataatacaacaacgtaagagta 14965842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 6807928 - 6808059
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||| ||||||||||| | | |||||||||||||||||||  | | ||||||||||||  ||||||||| |||||||||| |||    
T  6807928 acaacatgatcattaatatttcatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacatgacaacacagctacgtgagaatac 6808027  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| ||||||||||||||||||||||    
T  6808028 accacctctt-ataatacgacaacgtaagagta 6808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 17692290 - 17692168
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||||||||||||||| | | ||| ||||||||||| ||| | | ||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  17692290 atcattaatattccatggtttgtcatcaacaataacttcaacgaatcaacgacgacaacgtcaacctgacaatacagctacgtgagagtacaccacctct 17692191  T
Q  254 taataatacgacaacgtaagagta 277  Q
    | ||||||||||||||||||||||    
T  17692190 t-ataatacgacaacgtaagagta 17692168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 14871459 - 14871349
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||  | ||| ||||||||||||||||||    
T  14871459 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagagtac 14871360  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  14871359 accacctctta 14871349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 16978798 - 16978908
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | |  |||||||||||| | ||| ||||||||||||||||||    
T  16978798 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgactacaacgtcaacctgtcaatacaactacgtgagagtac 16978897  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  16978898 accacctctta 16978908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 22651641 - 22651751
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| ||||||||||||||||||    
T  22651641 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtac 22651740  T
Q  245 accacctctta 255  Q
    |||| ||||||    
T  22651741 accatctctta 22651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 17686067 - 17685945
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||| ||||||||||| | | ||||||||||||||||||  | | |||| |||||||| ||||| ||| |||||||||||||||||||||||    
T  17686067 atcattaatatttcatggtttgtcatcaacaacaacttcaacgattcgacgacgacatcgtcaacctgacaatacagctacgtgagagtacaccacctct 17685968  T
Q  254 taataatacgacaacgtaagagta 277  Q
    | ||||||||||||||||||||||    
T  17685967 t-ataatacgacaacgtaagagta 17685945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 36527431 - 36527540
Alignment:
Q  166 ccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgac 265  Q
    |||||||||||| | ||||||||||||||||||||  ||  ||||||||||||| ||||||||| |||||||||||||| ||||||||| || |||||||    
T  36527431 ccatggtttgtcatcatcaacaacttcaacgattcgacac-gacaacgtcaacctgacaacacagctacgtgagagtacgccacctctt-atcatacgac 36527528  T
Q  266 aacgtaagagta 277  Q
    ||||||||||||    
T  36527529 aacgtaagagta 36527540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 49970663 - 49970569
Alignment:
Q  179 ttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaaga 274  Q
    |||||||||||||||||||| | ||||  ||||| |||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  49970663 ttatcaacaacttcaacgatccgtcaacaacaacatcaacctgacaacacaactacatgagagtacaccacctctt-ataagacgacaacgtaaga 49970569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 15061432 - 15061544
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    ||||||||||||||| | | ||||||||||||||||||| | | ||||||||| ||| ||||| ||| |||||||||||||||||||||||| |||| ||    
T  15061432 attccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtctacctgacaatacagctacgtgagagtacaccacctctt-ataa-ac 15061529  T
Q  263 gacaacgtaagagta 277  Q
     ||||||||||||||    
T  15061530 aacaacgtaagagta 15061544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 255
Target Start/End: Complemental strand, 3265380 - 3265292
Alignment:
Q  166 ccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||||||||| | ||||||||||||||||||||  ||  ||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  3265380 ccatggtttgtcatcatcaacaacttcaacgattcgacac-gacaacgtcaacctgacaacacagctacgtgagagtacaccacctctta 3265292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 21837092 - 21837185
Alignment:
Q  183 caacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||||||| ||||  | ||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||| || ||||||||||||||    
T  21837092 caacaacttcaacaattcgacgatgacaacgtcaacctgacaatacaactacatgagagtacaccacctctt-ataaaacaacaacgtaagagta 21837185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 13520986 - 13520891
Alignment:
Q  181 atcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||||||||||||||  | | ||||||||||| | ||||||||||||||||  |||||||||||||||| |||||||||| ||||| |||||    
T  13520986 atcaacaacttcaacgattcgacgacgacaacgtcaatctgacaacacaactacgtatgagtacaccacctctt-ataatacgactacgtatgagta 13520891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 277
Target Start/End: Complemental strand, 13523714 - 13523620
Alignment:
Q  182 tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||||||| ||||  | | ||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||| || ||||||||    
T  13523714 tcaacaacttcaactattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctctt-ataatacgactacttaagagta 13523620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 13436002 - 13436045
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||||||||||||||| |||| || ||||||||||||||    
T  13436002 acgtgagagtacaccacctctt-ataacacaacaacgtaagagta 13436045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 34492890 - 34492763
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||    
T  34492890 acaacataatcattaatattccatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcatcctgacaacacaactacgtgagagtaca 34492791  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  34492790 ccacctctt-ataatacgacaacgtaaga 34492763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 13102058 - 13101939
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13102058 atcattaatatttcatgttttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacctgacaacacaactacgtgagagtacaccacctct 13101959  T
Q  254 taataatacgacaacgtaaga 274  Q
    | ||||||||||||| |||||    
T  13101958 t-ataatacgacaacctaaga 13101939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 24917461 - 24917588
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||| |||||    
T  24917461 acaacatattcatcaatattccatggtttgtctttatcaccaacttcaatgattcatcaacgacaacgtcaacctgacaatacaactacgtgagtgtaca 24917560  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
     |||||||| |||||||||||||||||||    
T  24917561 tcacctctt-ataatacgacaacgtaaga 24917588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 27472028 - 27472158
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | |||||| |||||| ||||| ||| |||||||||||||||    
T  27472028 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacatcaacctgacaatacagctacgtgagagtaca 27472127  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  27472128 ccacctctt-ataatacgacaacgtaagagta 27472158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 23708087 - 23707965
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||    
T  23708087 acaacatattcatcaatattacatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacagctacgtga-agtaca 23707989  T
Q  246 ccacctcttaataatacgacaacgt 270  Q
    | ||||||| |||||||||||||||    
T  23707988 caacctctt-ataatacgacaacgt 23707965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 21082391 - 21082281
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| ||||||||||||||||||    
T  21082391 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtac 21082292  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  21082291 accacctctta 21082281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 27485646 - 27485536
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | ||||||||||||||| | ||| ||||||||||||||||||    
T  27485646 gacaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactacgtgagagtac 27485547  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  27485546 accacctctta 27485536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 24680862 - 24680992
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||| ||||||| ||||| ||| |||||||||||||||    
T  24680862 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaaagtcaacctgacaatacagctacgtgagagtaca 24680961  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||||||||| |||||||||    
T  24680962 ccacctctt-ataatacgacaaggtaagagta 24680992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 24316607 - 24316477
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||| |||| || | | ||||||||||||||||||  | | ||||||||||||| ||||| ||| |||||||||||||||    
T  24316607 acaacataatcattaatattccattgtttttcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 24316508  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||| |||||||||||||||    
T  24316507 ccacctctt-ataatatgacaacgtaagagta 24316477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 24670411 - 24670541
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||    | ||||| ||||||| ||||| ||| |||||||||||||||    
T  24670411 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgatgacgacaatgtcaacctgacaatacagctacgtgagagtaca 24670510  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||||||||| |||||||||    
T  24670511 ccacctctt-ataatacgacaaggtaagagta 24670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 34874790 - 34874660
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||  |||||||||| | | ||||||||||||||||||| | | ||||||||||||| |||||  || ||||||||||||| |    
T  34874790 acaacataatcattaatattatatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatccagctacgtgagagtata 34874691  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||| ||||||||||||||||||||||    
T  34874690 ccacatctt-ataatacgacaacgtaagagta 34874660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 18359411 - 18359302
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||| ||||||||||| | | ||||||||||||||||||    | |||||||| |||| | ||| |||||||||||||| ||||    
T  18359411 acaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgatgacgacaacgttaacctgtcaatacaactacgtgagattaca 18359312  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  18359311 ccacctctta 18359302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 274
Target Start/End: Complemental strand, 23707960 - 23707899
Alignment:
Q  212 cgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaaga 274  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23707960 cgtcaacctgacaacacaactacgtgagagtacaccacctctt-ataatacaacaacgtaaga 23707899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 6390 - 6280
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  6390 attccatggtttgtctttatcaacaacttcaacgattcatcaacaacaacgtcaacctgacaacacaactacgtgagagtacaccacctctt-ataatac 6292  T
Q  263 gacaacgtaaga 274  Q
    ||||||||||||    
T  6291 gacaacgtaaga 6280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 10179 - 10304
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||||    
T  10179 acaacataatcattaatattccatggtttgtcattatcaacaacttcaacgattc------gacaacgtcaacctgacaacacaactacgtgagagtaca 10272  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| ||||||||||||||||||||||||||    
T  10273 ccaccacttaataatacgacaacgtaagagta 10304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 10294 - 10337
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||    
T  10294 acgtaagagtacatcacctctta-taatacgacaacgtaagagta 10337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 7636 - 7763
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| || ||||||||    
T  7636 acaacataatcattaatattcaatggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactatgttagagtaca 7735  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||||||||||||||||    
T  7736 ccacctctt-ataatacgacaacgtaaga 7763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 54479 - 54352
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  54479 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaaaacaactacgtgagagtaca 54380  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| ||||||||||||| |||||    
T  54379 ccacctctt-ataatacgacaacataaga 54352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 19879281 - 19879400
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||| | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  19879281 atcattaatatttcgtggtttgtctttatcaacaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacaccacctct 19879380  T
Q  254 taataatacgacaacgtaaga 274  Q
    | |||||||||||||||||||    
T  19879381 t-ataatacgacaacgtaaga 19879400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 22238595 - 22238466
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||| ||||||||||||||| | | ||||||||||||| ||||| ||||||||||||||||| |    
T  22238595 acaacataatcattaatattccatggtttgtcatgaacaaaaacttcaacgattcaacgacgacaacgtcaacctgacaatacaactacgtgagagtata 22238496  T
Q  246 ccacctcttaataatacgacaacgtaagagt 276  Q
    ||||||||| ||||||||| |||||||||||    
T  22238495 ccacctctt-ataatacgataacgtaagagt 22238466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 26453734 - 26453862
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||  | | ||||||||||||| | ||| ||||||||||||||||||    
T  26453734 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgaatcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtac 26453833  T
Q  245 accacctcttaataatacgacaacgtaaga 274  Q
    |||||||||| |||| || |||||||||||    
T  26453834 accacctctt-ataaaacaacaacgtaaga 26453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 23409305 - 23409435
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||||||| || | | ||||||||||||||||||| | | |||| ||||||||  |||| ||| |||||||||||||||    
T  23409305 acaacataatcattaatattccatggtttatcatcaacaacaacttcaacgattcaacgacgacatcgtcaacctaacaatacagctacgtgagagtaca 23409404  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  23409405 ccacctctt-ataatacgacaacgtaagagta 23409435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 12576710 - 12576823
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    ||||||||||||||| | | ||||||||||||||||||  | | ||||| ||||||| ||||| ||| |||||||||||| ||||||||||| |||||||    
T  12576710 attccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaatgtcaacctgacaatacagctacgtgagagtgcaccacctctt-ataatac 12576808  T
Q  263 gacaacgtaagagta 277  Q
    |||||||||||||||    
T  12576809 gacaacgtaagagta 12576823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 32807092 - 32807185
Alignment:
Q  183 caacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||||||||||||  | | ||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  32807092 caacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagtacaccacatctt-ataatacgacaacgtaagagta 32807185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 23477879 - 23477988
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||    | ||||||||||||| | ||| |||||||||||||||| ||    
T  23477879 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgaggacgacaacgtcaacctgtcaatacaactacgtgagagtgca 23477978  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  23477979 ccacctctta 23477988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 17461652 - 17461542
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||| ||| ||| ||| ||||||| ||| ||||||||||||||||||  | ||||||||||||||| ||||| ||| ||||||||||||||    
T  17461652 gacaacataatcagtaatatttcattgtttgtcattaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacagctacgtgagagtac 17461553  T
Q  245 accacctctta 255  Q
    || ||||||||    
T  17461552 actacctctta 17461542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 14103540 - 14103439
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    ||||| |||||||||||||||||| | | ||||||||||||||||||  ||| |||||||| |||| |  || |||||||||||||||||||||||||||    
T  14103540 atcatcaacattccatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtaaacctgttaatacaactacgtgagagtacaccacctct 14103441  T
Q  254 ta 255  Q
    ||    
T  14103440 ta 14103439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 16402207 - 16402147
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaat 206  Q
    |||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  16402207 acaacatattcatcaatattccatggtttgtctttatcaacaacttcaacgattcatcaat 16402147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 18024890 - 18024772
Alignment:
Q  158 ttaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaat 257  Q
    |||| |||||||| |||||| |   |||||||||||| |||||  | | ||||||||||||| ||||  |||||||||| |||||| |||| ||||| ||    
T  18024890 ttaatattccatgttttgtcatctacaacaacttcaaggattcgacgacgacaacgtcaacctgacattacaactacgtaagagtataccatctctt-at 18024792  T
Q  258 aatacgacaacgtaagagta 277  Q
    ||  | ||||||||||||||    
T  18024791 aaagcaacaacgtaagagta 18024772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 12576813 - 12576856
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||    
T  12576813 acgtaagagtacaccacctctt-ataaaacgacaacgtaagagta 12576856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 19879618 - 19879661
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||    
T  19879618 acgtaagagtacaccacctctt-ataaaacgacaacgtaagagta 19879661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 146 - 274
Target Start/End: Original strand, 8939743 - 8939870
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  8939743 acaacatattcatcaatattccatggtttgtctgtatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtaca 8939842  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||| | |||||||||||||||||||    
T  8939843 ccacctcgt-ataatacgacaacgtaaga 8939870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 15112444 - 15112574
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||    
T  15112444 acaacataatcattaatattctatgttttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacaccactacgtgagaataca 15112543  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||||||| |||||||||||    
T  15112544 ccacctctt-ataatacgaccacgtaagagta 15112574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 146 - 271
Target Start/End: Complemental strand, 14982078 - 14981954
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||||||| ||||||||| || |||||||||| ||||||||||| |||||||||||||    
T  14982078 acaacataatcattaatattccatggtttatctttatcaacaacttcaacaattcatcaacgataacgtcaacctgacaacacaacgacgtgagagtaca 14981979  T
Q  246 ccacctcttaataatacgacaacgta 271  Q
    ||||||||| ||||||||||||||||    
T  14981978 ccacctctt-ataatacgacaacgta 14981954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 15116016 - 15116146
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| ||||    
T  15116016 acaacataatcattaatatttcatgttttgtctttatcaacaacttcaacgattcatcaacgacaacgtcaacctgacaacaccactacatgagaataca 15116115  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||||||| |||||||||||    
T  15116116 ccacctctt-ataatacgaccacgtaagagta 15116146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 14157558 - 14157428
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| || ||||| |||||| | ||||||||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||    
T  14157558 acaacataatcattaatatcccatgatttgtcatcatcaacaacttcaacgattcgacaacgacaacgtcaacctgacaacacaactacgtgagagtaca 14157459  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||| ||||||||||||||||||||||    
T  14157458 ccacatctt-ataatacgacaacgtaagagta 14157428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 37793968 - 37793838
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||| ||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| ||| |||||||||||||||    
T  37793968 acaacataatcattaatattacatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 37793869  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  37793868 ccacctctt-ataatacgacaacgtaagagta 37793838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 46581188 - 46581058
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | ||||||| ||||| ||||| ||| |||||||||| ||||    
T  46581188 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgccaacctgacaatacagctacgtgagaataca 46581089  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  46581088 ccacctctt-ataatacgacaacgtaagagta 46581058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 255
Target Start/End: Complemental strand, 16551310 - 16551202
Alignment:
Q  147 caacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacac 246  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| ||||||||||||||||||||    
T  16551310 caacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtacac 16551211  T
Q  247 cacctctta 255  Q
    |||||||||    
T  16551210 cacctctta 16551202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 147 - 255
Target Start/End: Original strand, 16614352 - 16614460
Alignment:
Q  147 caacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacac 246  Q
    ||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| ||||||||||||||||||||    
T  16614352 caacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtacac 16614451  T
Q  247 cacctctta 255  Q
    |||||||||    
T  16614452 cacctctta 16614460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 16998147 - 16998275
Alignment:
Q  148 aacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacacc 247  Q
    ||||| |||||||| ||||||||||||||| | | ||||||||||||||||||  | ||||||||||||||| ||||| ||| ||| |||||||||||||    
T  16998147 aacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacagctatgtgagagtacacc 16998246  T
Q  248 acctcttaataatacgacaacgtaagagta 277  Q
    |||| || ||||||||||||| ||||||||    
T  16998247 acct-tttataatacgacaacataagagta 16998275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 11084680 - 11084806
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| || ||||| | ||||||||||||| | | ||| ||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||    
T  11084680 acaacataataattaatactccatggtttgtcatcaacaagaacttcaacgattcaacgacgacaacgtcaacctgacaagacagctacgtgagagtaca 11084779  T
Q  246 ccacctcttaataatacgacaacgtaag 273  Q
    ||||||||| ||||||||||||||||||    
T  11084780 ccacctctt-ataatacgacaacgtaag 11084806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 12556500 - 12556630
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||| ||||||||||| | | ||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||    
T  12556500 acaacataatcattaatatttcatggtttgtcatcaacaacaacttcaacgattcaactacgacaacgtcaacctgacaatacagctacgtgagagtaca 12556599  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||| |||||||| ||| ||||    
T  12556600 ccacctctt-ataagacgacaacataatagta 12556630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 15719643 - 15719756
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||||    
T  15719643 attccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaaccacgtaagagtacaccacctctt-ataatac 15719741  T
Q  263 gacaacgtaagagta 277  Q
    |||||||||||||||    
T  15719742 gacaacgtaagagta 15719756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 277
Target Start/End: Complemental strand, 1490770 - 1490650
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| ||| ||||||||||||||||||||||||     
T  1490770 cattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacacctacgtgagagtacaccacctctt- 1490672  T
Q  256 ataatacgacaacgtaagagta 277  Q
    |||| || ||||||||||||||    
T  1490671 ataaaacaacaacgtaagagta 1490650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 9320887 - 9320777
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||||||||||||||| | | |||||||||||||||||||  | | ||||| ||||||| ||||||||| |||||| |||||||    
T  9320887 acaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaatgtcaacctgacaacacagctacgtaagagtac 9320788  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  9320787 accacctctta 9320777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 14272950 - 14273077
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||| |||||||||||||||   || |||||||||||||||||  | |||||||||||||||  ||||  ||  ||||||||||||     
T  14272950 gacaacataatcattaatattccatggtttgtc---attaacaacttcaacgattcgacgatgacaacgtcaaccttacaa-tcagttacgtgagagtat 14273045  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| |||||||||| |||||||||||    
T  14273046 accacctctt-ataatacgaccacgtaagagta 14273077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 16323642 - 16323714
Alignment:
Q  155 tcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaaca 227  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||| ||||||| |||||||    
T  16323642 tcattaatattccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaaca 16323714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 14416729 - 14416611
Alignment:
Q  158 ttaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaat 257  Q
    |||| |||||||| |||||| |   |||||||||||| |||||  | | ||||||||||||| ||||  |||||||||| ||||||||||||||||| ||    
T  14416729 ttaatattccatgttttgtcatctacaacaacttcaaggattcgacgacgacaacgtcaacctgacattacaactacgtaagagtacaccacctctt-at 14416631  T
Q  258 aatacgacaacgtaagagta 277  Q
    ||||| ||||||||||||||    
T  14416630 aatacaacaacgtaagagta 14416611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 10502031 - 10501958
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacc 219  Q
    |||||||  ||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||| |||||||    
T  10502031 acaacatattcattaatattccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacc 10501958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 32161346 - 32161224
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||||||| || | | |||||||||||||||         |||||| |||||| ||||||||| |||| ||||||||||    
T  32161346 acaacataatcattaatattccatggtttatcatcaacaacaacttcaacgac--------gacaacttcaacctgacaacacagctacatgagagtaca 32161255  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||| || ||||||||||||||    
T  32161254 ccacctctt-ataaaacaacaacgtaagagta 32161224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 11092432 - 11092524
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtga 238  Q
    ||||||| || ||||| | ||||||||||||| | | || |||||||||||||||| | | ||||||||||||| ||||| ||| ||||||||    
T  11092432 acaacataataattaataatccatggtttgtcatcaacagcaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtga 11092524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 12556712 - 12556761
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| ||||||||||||||||| ||||||||||| ||||||||||    
T  12556712 acaacaacgtaagagtacaccacctctt-ataatacgacagcgtaagagta 12556761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 34957083 - 34957135
Alignment:
Q  224 aacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||| |||| ||||||||||||||||| |||| ||||||| |||||||||    
T  34957083 aacacaacaacgtaagagtacaccacctctt-ataaaacgacaaagtaagagta 34957135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 16551178 - 16551150
Alignment:
Q  227 acaactacgtgagagtacaccacctctta 255  Q
    |||||||||||||||||||||||||||||    
T  16551178 acaactacgtgagagtacaccacctctta 16551150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 16614484 - 16614512
Alignment:
Q  227 acaactacgtgagagtacaccacctctta 255  Q
    |||||||||||||||||||||||||||||    
T  16614484 acaactacgtgagagtacaccacctctta 16614512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1508 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1508
Description:

Target: scaffold1508; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 178 - 51
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||| ||||||  |||||||||||||||||||||||||    
T  178 acaacataatcattaatattcaatggtttgtctttatcaacaacttcaacaattcatcaacgacaatgtcaacttgacaacacaactacgtgagagtaca 79  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| |||||| ||||||||||||    
T  78 ccacctctt-ataatatgacaacgtaaga 51  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 12271120 - 12271250
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||| ||||    
T  12271120 acaacataatcattaatattccatgttttgtctttatcaacaacttcaacggttcatcaacgacaacgtcaacctgacaacaccactacgtgagaataca 12271219  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||||||| | |||||||||    
T  12271220 ccacctctt-ataatacgaccatgtaagagta 12271250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 8881881 - 8882012
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||||||||||||||| | | |||||||||||||||||||  | | ||||||||||||| ||||||||| ||||||||||||||    
T  8881881 acaacatgatcattaatattccatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagtac 8881980  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| ||||||||||||||| ||||||    
T  8881981 accacctctt-ataatacgacaacgtcagagta 8882012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 22357284 - 22357414
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| || | |||||||||| |||||||||||||||||||||| |||| ||||| ||||||| ||||| |||||||||||||||||||    
T  22357284 acaacataatcattaatatccaatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaatacaactacgtgagagtaca 22357383  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||  |||||||||||||||||    
T  22357384 ccacctctt-atagaacgacaacgtaagagta 22357414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 25263584 - 25263454
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||  | | ||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||    
T  25263584 acaacataatcattaatattccatggtttgtaatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 25263485  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||| |||||||||||||||    
T  25263484 ccacctctt-ataatatgacaacgtaagagta 25263454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 22358970 - 22359079
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| || | |||||||||| |||||||||||||||||||||| |||| ||||| ||||||| ||||| |||||||||||||||||||    
T  22358970 acaacataatcattaatatccaatggtttgtcattatcaacaacttcaacgattcgtcaacgacaatgtcaacctgacaatacaactacgtgagagtaca 22359069  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  22359070 ccacctctta 22359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 10492540 - 10492430
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||  |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| ||||||||||||||||||    
T  10492540 gacaacaaaatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtac 10492441  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  10492440 accacctctta 10492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 23072572 - 23072681
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||| ||||  | | ||||||||||||| | ||| |||||||||||||||||||    
T  23072572 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacaattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 23072671  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  23072672 ccacctctta 23072681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 46198889 - 46198780
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||  | | ||||||||||||||||||  | | ||||||||||||| | ||| |||||||||||||||||||    
T  46198889 acaacataatcattaacattccatggtttgttatcaccaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 46198790  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  46198789 ccacctctta 46198780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 21740338 - 21740228
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||||||||||| ||||||| | | ||||||||||||||||||  | | ||||||||||||  | ||| ||||||||||||||||||    
T  21740338 gacaacataatcattaacattccattgtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagagtac 21740239  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  21740238 accacctctta 21740228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 27653776 - 27653669
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||| |||||||||||||||   |||||||||||||| |||||  | ||||||||||||||| | ||| ||| ||||||||||||||    
T  27653776 gacaacataatcattaatattccatggtttgtc---atcaacaacttcaaggattcgacgatgacaacgtcaacctgtcaatacagctacgtgagagtac 27653680  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  27653679 accacctctta 27653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 13513530 - 13513643
Alignment:
Q  163 attccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatac 262  Q
    ||||||||||||||| | | ||||||||||||||||||| ||| |||| |||||| | ||||| | | |||| ||||||||||||||||||| |||||||    
T  13513530 attccatggtttgtcatcaacaacaacttcaacgattcaacaacgacagcgtcaatctgacaatatagctacatgagagtacaccacctctt-ataatac 13513628  T
Q  263 gacaacgtaagagta 277  Q
    ||| |||||||||||    
T  13513629 gactacgtaagagta 13513643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 51326356 - 51326465
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| ||||||||||||||| |||| ||| | | ||||||||||||||||||  | |  || ||||||||| | ||| |||||||||||| ||||||    
T  51326356 acaacataatcattaacattccagggttggtcatcaacaacaacttcaacgattcgacgacaacnacgtcaacctgtcaatacaactacgtgaaagtaca 51326455  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  51326456 ccacctctta 51326465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 20315666 - 20315731
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaa 211  Q
    |||||||  ||||||| | ||||||||||||| |||||||||||||||||||||| |||| |||||    
T  20315666 acaacatattcattaatagtccatggtttgtcattatcaacaacttcaacgattcgtcaacgacaa 20315731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 20315883 - 20315964
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaaca 227  Q
    |||||||  ||||||| | ||||||||||||| || ||||||||||||||||||| |||  ||||| ||||||| |||||||    
T  20315883 acaacatattcattaatagtccatggtttgtcattttcaacaacttcaacgattcgtcatcgacaatgtcaacctgacaaca 20315964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 23072719 - 23072768
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  23072719 acaacaacgtaagagtacaccacctctta-taatacgacaacgtaagagta 23072768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 13513630 - 13513676
Alignment:
Q  230 actacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  13513630 actacgtaagagtacaccacctctt-ataagacgacaacgtaagagta 13513676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 29764730 - 29764699
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtc 177  Q
    ||||||||||||||||||||||||||||||||    
T  29764730 acaacatgatcattaacattccatggtttgtc 29764699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 21740190 - 21740141
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| ||||||||||||||||| |||||||||| |||||||||||    
T  21740190 acaacaacgtaagagtacaccacctctt-ataatacgacgacgtaagagta 21740141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 25263437 - 25263388
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| ||||||||||||||||| |||||| |||||||||||||||    
T  25263437 acaacaacgtaagagtacaccacctctt-ataatatgacaacgtaagagta 25263388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 11809644 - 11809601
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||||||||||||||| |||| || ||||||||||||||    
T  11809644 acgtgagagtacaccacctctt-ataaaacaacaacgtaagagta 11809601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 25263333 - 25263290
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||    
T  25263333 acgtaagagtacaccacctctt-ataatatgacaacgtaagagta 25263290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 10213 - 10343
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||    
T  10213 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtaca 10312  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  10313 ccacctctt-ataatacgacaacgtaagagta 10343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 126569 - 126699
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| || |||||||||||| | ||||||||||||||||||||  ||| |||||| |||||| ||||||||| |||||||||||||||    
T  126569 acaacataatcattaatatcccatggtttgtcatcatcaacaacttcaacgattcgacaacgacaacatcaacctgacaacacagctacgtgagagtaca 126668  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||| ||||||||||||||||||||||    
T  126669 ccacatctt-ataatacgacaacgtaagagta 126699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 77428 - 77558
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    |||||||  |||| || ||||||| ||||||| |||||||||| ||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||    
T  77428 acaacatattcatcaatattccatagtttgtcattatcaacaatttcaacgattcgtcaacgacaacgtcaacctgacaacacagctacgtgagagtaca 77527  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| |||||| ||| || ||||||||    
T  77528 ccacctctt-ataatatgactacataagagta 77558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 77581 - 77624
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||    
T  77581 acgtaagagtacgccacctctta-taatacgacaacgtaagagta 77624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 77614 - 77657
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||    
T  77614 acgtaagagtacgccacctctta-taatacgacaacgtaagagta 77657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 26787 - 26656
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||| |||||||| |||||| | | ||||||||||||||||||  | ||||||||||||||| ||||| ||| ||||| ||||||||    
T  26787 gacaacataatcattaatattccatgttttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgacaatacacctacgagagagtac 26688  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| ||||||||||||||||||||||    
T  26687 accacctctt-ataatacgacaacgtaagagta 26656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 35852352 - 35852483
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtc-tttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| |||||||| ||||||    ||||||||||||||||||||  | | ||||||||||||| ||||||||| ||||||||||||||    
T  35852352 acaacatgatcattaatattccatgatttgtcaccaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacgtgagagtac 35852451  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| ||||||||||||||||||||||    
T  35852452 accacctctt-ataatacgacaacgtaagagta 35852483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 17010521 - 17010631
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||  | ||||||||||||||| | ||| ||||||| ||||||||||    
T  17010521 gacaacatgatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactatgtgagagtac 17010620  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  17010621 accacctctta 17010631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 24212049 - 24212180
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtcttta-tcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||||||||||| ||| ||||||||||| | | |||||||||||||||||||  | | ||||||||||||| |||||||||  ||||| |||||||    
T  24212049 acaacatgatcattaatatttcatggtttgtcatcaatcaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagttacgtaagagtac 24212148  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| |||| |||||||||||||||||    
T  24212149 accacctctt-ataaaacgacaacgtaagagta 24212180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 274
Target Start/End: Complemental strand, 41862109 - 41861982
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||||||| |||| ||||||||||    
T  41862109 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaacacagctacatgagagtaca 41862010  T
Q  246 ccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||| ||||||  |||||||||||    
T  41862009 ccacctctt-ataatataacaacgtaaga 41861982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 27768039 - 27767929
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||  | | |||||||| |||| | ||| ||||||||||||||||||    
T  27768039 gacaacatgatcattaacattccatggtttgtcatcaacaacaactttaacgattcgacgacgacaacgttaacctgtcaatacaactacgtgagagtac 27767940  T
Q  245 accacctctta 255  Q
    | |||||||||    
T  27767939 atcacctctta 27767929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 6765371 - 6765480
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||  | ||| |||||||||||||| ||||    
T  6765371 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgagattaca 6765470  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  6765471 ccacctctta 6765480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 262722 - 262832
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||||||||||||||||||| | | |||| |||||||||||||  | | ||||||||||||  | ||| |||||||||||| |||||    
T  262722 gacaacataatcattaacattccatggtttgtcatcaacaaccacttcaacgattcgacgacgacaacgtcaacttgtcaatacaactacgtgaaagtac 262821  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  262822 accacctctta 262832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 29447640 - 29447709
Alignment:
Q  207 gacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||| |||||| ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  29447640 gacaacttcaacctgacaacacagctacgtgaaagtacaccacctctt-ataatacgacaacgtaagagta 29447709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 20299175 - 20299230
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattca 201  Q
    ||||||| |||||||| ||||||||||||||| | | |||||||||||||||||||    
T  20299175 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattca 20299230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 30139045 - 30138976
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgt 214  Q
    |||||||| |||||||| |||  |||||||||| ||| |||| |||||||||||||  | ||||||||||    
T  30139045 gacaacataatcattaatattttatggtttgtcattaacaacgacttcaacgattcgacgatgacaacgt 30138976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 31252941 - 31252898
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||    
T  31252941 acgtaagagtacaccacctctt-ataatacgacagcgtaagagta 31252898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 355 - 485
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | |||||||||||||   ||| ||||||||||||||||| |    
T  355 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctttcaatacaactacgtgagagtata 454  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  455 ccacctctt-ataatacgacaacgtaagagta 485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 508 - 551
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    
T  508 acgtaagagtacaccacctctta-taatacgacaacgtaagagta 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 66804 - 66934
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| ||||| || ||| ||||||||||| | | || |||||||||||||||| | ||||||||||||||| ||||| ||| |||||||||||||||    
T  66804 acaacataatcatcaatatttcatggtttgtcatcaacatcaacttcaacgattcaacgatgacaacgtcaacctgacaatacagctacgtgagagtaca 66903  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||||||||||||||||||    
T  66904 ccacctctt-ataatacgacaacgtaagagta 66934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 170384 - 170262
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||||| ||||||||||||||  | | ||||||||||||||||||| | | ||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  170384 atcattaatattccatggtttgtaatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacaatacagctacgtgagagtacaccacctct 170285  T
Q  254 taataatacgacaacgtaagagta 277  Q
    | ||||||||||||||||||||||    
T  170284 t-ataatacgacaacgtaagagta 170262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0877 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0877
Description:

Target: scaffold0877; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 3336 - 3205
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||| ||| |||||||| ||| ||||||||||| ||| ||||||||||||||||||  | |||| |||||||||| ||||| ||| |||||||||||||     
T  3336 gacagcatcatcattaatatttcatggtttgtccttaacaacaacttcaacgattcgacgatgaaaacgtcaacctgacaatacagctacgtgagagtaa 3237  T
Q  245 accacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||| |||||||||| |||||||||||    
T  3236 accacctctt-ataatacgaccacgtaagagta 3205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 68874 - 69004
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| ||||||||||||||| | | ||||||||||||||||||| | | ||||||||||||| ||| | ||| |||| ||||||||||    
T  68874 acaacataatcattaatattccatggtttgtcatcaacaacaacttcaacgattcaacgacgacaacgtcaacctgacgatacagctacatgagagtaca 68973  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    |||||| || ||||||||||||| ||||||||    
T  68974 ccacct-tttataatacgacaacttaagagta 69004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 69060 - 69103
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||    
T  69060 acgtaagagtacaccacctctt-ataaaacgacaacgtaagagta 69103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 274
Target Start/End: Original strand, 7388 - 7476
Alignment:
Q  185 acaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaaga 274  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  7388 acaacttcaacaattcatcaacgacaacgtcaacctgacaacacaactacgtgagagtacatcacctctt-ataatacgacaacataaga 7476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 3861 - 3970
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| |||||||||||||||||||    
T  3861 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 3960  T
Q  246 ccacctctta 255  Q
    ||| ||||||    
T  3961 ccatctctta 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 3861 - 3970
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| |||||||||||||||||||    
T  3861 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaactacgtgagagtaca 3960  T
Q  246 ccacctctta 255  Q
    ||| ||||||    
T  3961 ccatctctta 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 106 - 215
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| ||||||||||||| |||||||||| | | ||||||||||||||||||  | |||||||||| |||| | ||| |||||||||||||||||||    
T  106 acaacataatcattaacattctatggtttgtcatcaacaacaacttcaacgattcgacgatgacaacgtaaacctgtcaatacaactacgtgagagtaca 205  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  206 ccacctctta 215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 7188 - 7309
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||||||||||||| | | | ||||||||||||||||||    | ||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  7188 cattaatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctctta 7287  T
Q  256 ataatacgacaacgtaagagta 277  Q
      ||||||||||||||||||||    
T  7288 taaatacgacaacgtaagagta 7309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 16221 - 16342
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||||||||||||| | | | ||||||||||||||||||    | ||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  16221 cattaatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctctta 16320  T
Q  256 ataatacgacaacgtaagagta 277  Q
      ||||||||||||||||||||    
T  16321 taaatacgacaacgtaagagta 16342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 18241 - 18362
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||||||||||||| | | | ||||||||||||||||||    | ||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  18241 cattaatattccatggtttggcatcaacaacaacttcaacgattcggtgacgacaatgtcagcccgacaatacaactacgtgatagtacaccacctctta 18340  T
Q  256 ataatacgacaacgtaagagta 277  Q
      ||||||||||||||||||||    
T  18341 taaatacgacaacgtaagagta 18362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 13805 - 13872
Alignment:
Q  208 acaacgtcaacccgacaacacaactacgtgagagtacaccacctcttaataatacgacaacgtaagag 275  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  13805 acaatgtcaacccgacaatacaactacgtgagagtacaccacctcttataaatacgacaacgtaagag 13872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 71043 - 70934
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| | |||||||||||||||||    
T  71043 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatataactacgtgagagtaca 70944  T
Q  246 ccacctctta 255  Q
    ||| ||||||    
T  70943 ccatctctta 70934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 362277 - 362387
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||||||||||| ||||||||||| | | ||||||||||||||||||  | | ||||||||||||  | ||| ||||||||||||||||||    
T  362277 gacaacataatcattaacatttcatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacatgtcaatacaactacgtgagagtac 362376  T
Q  245 accacctctta 255  Q
    |||| ||||||    
T  362377 accaactctta 362387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 362425 - 362474
Alignment:
Q  227 acaactacgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    ||||| |||| ||||||||||||||||| |||||||||| |||||||||||    
T  362425 acaacaacgtaagagtacaccacctctt-ataatacgacgacgtaagagta 362474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 362464 - 362507
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||    
T  362464 acgtaagagtacaccacctctt-ataatacaacaacgtaagagta 362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 977 - 876
Alignment:
Q  154 atcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    ||||| |||||||||||||||||| | | ||||||||||||||||||  ||| |||||||| |||| |  || |||||||||||||||||||||||||||    
T  977 atcatcaacattccatggtttgtcatcaacaacaacttcaacgattcgacaacgacaacgtaaacctgttaatacaactacgtgagagtacaccacctct 878  T
Q  254 ta 255  Q
    ||    
T  877 ta 876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 12574 - 12693
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||| |||| |||||| | | ||||||||||||||||||  | | ||||||||||| ||||||| |||||||||| ||||||||| |||||||     
T  12574 cattaatatttcatgttttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaa-ccgacaatacaactacgtaagagtacacgacctctt- 12671  T
Q  256 ataatacgacaacgtaagagta 277  Q
    ||||||||||||||||||||||    
T  12672 ataatacgacaacgtaagagta 12693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 8524 - 8427
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctct 253  Q
    |||||| ||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  8524 cattaatattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgacaatacaactacgtaagagtacaccacctct 8427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 277
Target Start/End: Complemental strand, 7518 - 7388
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||| ||| ||| ||||||||||| | | |||||| |||||||||||  | | ||||||||||||| ||||| || ||||||| ||||||||    
T  7518 acaacataatcaataatatttcatggtttgtcatcaacaacaaattcaacgattcgacgacgacaacgtcaacctgacaatactactacgtcagagtaca 7419  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    ||||||||| ||||||| |||| |||||||||    
T  7418 ccacctctt-ataatacaacaatgtaagagta 7388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 15327 - 15437
Alignment:
Q  145 gacaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtac 244  Q
    |||||||| |||| ||| ||| ||| ||||||| | | ||||||||||||||||||  | ||||||||||||||| | ||| ||||||||||||||| ||    
T  15327 gacaacataatcaataatatttcatagtttgtcataaacaacaacttcaacgattcgacgatgacaacgtcaacctgtcaatacaactacgtgagagcac 15426  T
Q  245 accacctctta 255  Q
    |||||||||||    
T  15427 accacctctta 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 255
Target Start/End: Original strand, 7821 - 7930
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| ||||||| |||||||||||||||| | | ||||||||||||||||||  | | |||||| |||||| | ||| ||||||| |||||| ||||    
T  7821 acaacataatcattatcattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacatcaacctgtcaatacaactatgtgagattaca 7920  T
Q  246 ccacctctta 255  Q
    ||||||||||    
T  7921 ccacctctta 7930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 75924 - 76051
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtaca 245  Q
    ||||||| |||||||| |||||||||| |||| | | ||||||||||||||||||| ||| ||||||||||||| |  || ||||| |||| ||||||||    
T  75924 acaacataatcattaatattccatggtgtgtcatcaacaacaacttcaacgattcaacaacgacaacgtcaacctg--aaaacaacaacgtaagagtaca 76021  T
Q  246 ccacctcttaataatacgacaacgtaagagta 277  Q
    || |||||| |||| || ||||||||||||||    
T  76022 cctcctctt-ataa-acaacaacgtaagagta 76051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 277
Target Start/End: Complemental strand, 2458 - 2326
Alignment:
Q  145 gacaacatgatcattaacattccatggttt-gtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagta 243  Q
    |||||||| |||||||| ||| |||||||| ||| | | ||||||||||||||||||  | ||||||||| ||||  || || ||| |||| ||||||||    
T  2458 gacaacataatcattaatatttcatggttttgtcatcaacaacaacttcaacgattcgacgatgacaacgacaacttgataatacagctacatgagagta 2359  T
Q  244 caccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||| || |||||||||||| |||||||||    
T  2358 caccacct-tttataatacgacaatgtaagagta 2326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 2273 - 2230
Alignment:
Q  233 acgtgagagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||| |||||||||||||||||| |||||||||||||||||||||    
T  2273 acgtaagagtacaccacctctta-taatacgacaacgtaagagta 2230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 1693 - 1780
Alignment:
Q  146 acaacatgatcattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaacta 233  Q
    ||||||| |||||||||||||||||||||||| | | ||||||||||||||||||  | | ||||||||||||| | ||| |||||||    
T  1693 acaacataatcattaacattccatggtttgtcatcaacaacaacttcaacgattcgacgacgacaacgtcaacctgtcaatacaacta 1780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 158941 - 159061
Alignment:
Q  156 cattaacattccatggtttgtctttatcaacaacttcaacgattcatcaatgacaacgtcaacccgacaacacaactacgtgagagtacaccacctctta 255  Q
    |||||| ||| ||||||||| | | | ||||||||||||||||||    |  |||||||||||| ||||| ||| |||| ||||||| ||||||||| ||    
T  158941 cattaatatttcatggtttggcatcaacaacaacttcaacgattcgatgacaacaacgtcaacctgacaataca-ctacatgagagttcaccacctccta 159039  T
Q  256 ataatacgacaacgtaagagta 277  Q
      ||||| ||||||||||||||    
T  159040 taaatacaacaacgtaagagta 159061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1783 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1783
Description:

Target: scaffold1783; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 277
Target Start/End: Original strand, 1 - 39
Alignment:
Q  238 agagtacaccacctcttaataatacgacaacgtaagagta 277  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  1 agagtacaccacctctta-taatacgacaacgtaagagta 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University