View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12791_low_1 (Length: 422)
Name: NF12791_low_1
Description: NF12791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12791_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 329878 - 330278
Alignment:
| Q |
1 |
aggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtagtgaaaaatatacatacaattcgaagcagcaaac |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
329878 |
aggcagcaacagcagagagcagcacaactgcaccaatatacaaacgcaaacaagttagtacgagtggtgaaaaatatatatacaattcgaagcagcaaac |
329977 |
T |
|
| Q |
101 |
atacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacatgaagnnnnnnn-accaatagattgcaagtctctgtattttgct |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || |
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|
| T |
329978 |
atacaatatcttcttcatgcatatgatctatttatctgtctatcatgacatgaacataaagttttttttaccaatagattgcaagtctctgtattttact |
330077 |
T |
|
| Q |
200 |
attttacataaaatattaagaattaccaacaatggaatgtgcaaaatttcaatttgataggagaaattgttctatttgtaactgtatgcatctataaaca |
299 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
330078 |
attttacataaaatattaagaattaccagtaatggaatgtgcaaaatttcaatttgatgggagaaattgttctatttgtaactgtatgcatctataaaca |
330177 |
T |
|
| Q |
300 |
catttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtgacct |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
330178 |
catttcttttgatgagaatcataagtattggattttgtttgcttgtttagtatttgtttcaaatcttaagtatttaaaacacatgaagttagtgtggcct |
330277 |
T |
|
| Q |
400 |
t |
400 |
Q |
| |
|
| |
|
|
| T |
330278 |
t |
330278 |
T |
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