View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12791_low_4 (Length: 300)

Name: NF12791_low_4
Description: NF12791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12791_low_4
NF12791_low_4
[»] chr8 (1 HSPs)
chr8 (18-282)||(42005758-42006023)
[»] chr1 (2 HSPs)
chr1 (120-261)||(49171816-49171955)
chr1 (203-251)||(2899913-2899961)
[»] chr5 (2 HSPs)
chr5 (122-261)||(10018942-10019080)
chr5 (183-244)||(5547835-5547896)
[»] chr4 (2 HSPs)
chr4 (121-282)||(16542893-16543053)
chr4 (184-244)||(133997-134057)
[»] chr3 (3 HSPs)
chr3 (164-282)||(33819360-33819477)
chr3 (201-252)||(16970448-16970499)
chr3 (198-252)||(16240393-16240447)
[»] chr6 (3 HSPs)
chr6 (120-282)||(29816598-29816756)
chr6 (217-252)||(1881931-1881966)
chr6 (203-252)||(33691502-33691551)
[»] chr7 (3 HSPs)
chr7 (178-282)||(49076388-49076487)
chr7 (201-248)||(32057332-32057379)
chr7 (202-246)||(26798757-26798801)
[»] scaffold0085 (1 HSPs)
scaffold0085 (201-282)||(47573-47653)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 42005758 - 42006023
Alignment:
Q  18 cttcttatgtgctgtgaggatgaagatttaactttttggtagttaaatgccaattattttcttacgatcgatttgtatcctttaaaattattttcnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  42005758 cttcttatgtgctgtgaggatgaagatttaactttttggtagttaaatgccaattattttcttacgatcgatttgtatcctttaaaattattttcttttt 42005857  T
Q  118 nngataacaagagggccttagcccc-agaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaat 216  Q
      ||||||||||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42005858 ttgataacaagagggccttagcccccaaaaaaaaaagagaactaccatttaataaaaggcggagtcaaaataccaatagagtcagctaaaaataacaaat 42005957  T
Q  217 taatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 282  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42005958 taatttgagcaggacaatgctcatataacatcaaagaataatctcttatcacatgtcatattcgcc 42006023  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 49171955 - 49171816
Alignment:
Q  120 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaa 219  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||||| || ||||||||||||||||   ||||  |||||||||||    
T  49171955 gataacaagagggccttagcccg-gaaaaaagagagaactaccacttaacaaaatgcggaatcgaaataccaatagagtcaattaaag-taacaaattaa 49171858  T
Q  220 tttgagcaggacaatgctcatataacatcaaagaataacctc 261  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  49171857 tttgagcacgacaatgctcatataacatcaaagaataacctc 49171816  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 2899913 - 2899961
Alignment:
Q  203 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaa 251  Q
    ||||||||||| | |||||||||||| ||||||||||||||| ||||||    
T  2899913 taaaaataacatactaatttgagcagtacaatgctcatataatatcaaa 2899961  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 10019080 - 10018942
Alignment:
Q  122 taacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaatt 221  Q
    |||||||||||||||||||| | ||||||||||| | | || ||||| |||| |||||||| |||||| ||||||||| |||||||||||||||||||||    
T  10019080 taacaagagggccttagcccaa-aaaaaagagaggattgccgcttaacaaaacgcggagtcgaaatactaatagagtcagctaaaaataacaaattaatt 10018982  T
Q  222 tgagcaggacaatgctcatataacatcaaagaataacctc 261  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  10018981 tgagtaggacaatgttcatataacatcaaagaataacctc 10018942  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 5547896 - 5547835
Alignment:
Q  183 aaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataa 244  Q
    |||||||||||||| || ||||| | ||||||| ||||||||||||||||||||||||||||    
T  5547896 aaaataccaatagaatcagctaacattaacaaactaatttgagcaggacaatgctcatataa 5547835  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 282
Target Start/End: Complemental strand, 16543053 - 16542893
Alignment:
Q  121 ataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaat 220  Q
    ||||||||||||||||||||||| |||||||| ||||| ||| | ||| ||||    ||||| |||||||||  ||||  || |||||||| ||||||||    
T  16543053 ataacaagagggccttagccccaaaaaaaagatagaacaaccgcataacaaaacatagagtcgaaataccaacggagttagccaaaaataataaattaat 16542954  T
Q  221 ttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 282  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  16542953 ttgagcaagataatgctcatataacatcaaagaataacctc-catcacatgtcatattcgcc 16542893  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 134057 - 133997
Alignment:
Q  184 aaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataa 244  Q
    ||||||||||||| || ||||| | ||||||| |||||||||||||| ||||||| |||||    
T  134057 aaataccaatagaatcagctaacattaacaaactaatttgagcaggataatgctcgtataa 133997  T

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Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 33819360 - 33819477
Alignment:
Q  164 cttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctctt 263  Q
    ||||| |||| |||||||  |||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  33819360 cttaacaaaatgcggagttgaaatactaatagagtcagctaaaaataacaaattaattttagcaggacaatgctcatataacatcaaagaataacctc-c 33819458  T
Q  264 atcacatgtcatattcgcc 282  Q
    |||||||| | ||||||||    
T  33819459 atcacatgccttattcgcc 33819477  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 16970448 - 16970499
Alignment:
Q  201 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 252  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||||||||    
T  16970448 gctaaaaacaacatactaatttgagcaggacaatgctcatataacatcaaag 16970499  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 16240393 - 16240447
Alignment:
Q  198 tcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 252  Q
    |||| |||||| || |||||||| ||||| |||||||||| ||||||||||||||    
T  16240393 tcggttaaaaacaataaattaatctgagctggacaatgcttatataacatcaaag 16240447  T

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Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 29816598 - 29816756
Alignment:
Q  120 gataacaagagggccttagccccagaaaaaagagagaactaccacttaataaaaggcggagtcaaaataccaatagagtcggctaaaaataacaaattaa 219  Q
    ||||| ||||| |||||||||| |||||| ||||||||||||| ||||| |||  ||| |||| ||||||| ||| |||| ||||||||||| ||| |||    
T  29816598 gataaaaagagagccttagccc-agaaaa-agagagaactaccgcttaacaaattgcgcagtcgaaataccgataaagtcagctaaaaataataaa-taa 29816694  T
Q  220 tttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 282  Q
     ||||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||    
T  29816695 attgagcaagacaatgctcatataacatcaaataataacct-tcatcacatgtcatattcgcc 29816756  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 1881931 - 1881966
Alignment:
Q  217 taatttgagcaggacaatgctcatataacatcaaag 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  1881931 taatttgagcaggacaatgctcatataacatcaaag 1881966  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Original strand, 33691502 - 33691551
Alignment:
Q  203 taaaaataacaaattaatttgagcaggacaatgctcatataacatcaaag 252  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  33691502 taaaaataacatattaatttgagcaggaccattttcatataacatcaaag 33691551  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 49076388 - 49076487
Alignment:
Q  178 gagtcaaaataccaatagagtcggctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatat 277  Q
    ||||||||||| ||||| |||| ||||||||||| |||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49076388 gagtcaaaatatcaataaagtcagctaaaaataataaattaatttg----cgacaatgctcatataacatcaaagaataacct-ttatcacatgtcatat 49076482  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 32057332 - 32057379
Alignment:
Q  201 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatc 248  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||    
T  32057332 gctaaaaataacatattaatttgagcaggacaatagtcgtataacatc 32057379  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 26798757 - 26798801
Alignment:
Q  202 ctaaaaataacaaattaatttgagcaggacaatgctcatataaca 246  Q
    |||||||||||||| |||| |||| ||||||||||| ||||||||    
T  26798757 ctaaaaataacaaactaatatgagtaggacaatgcttatataaca 26798801  T

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Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 282
Target Start/End: Complemental strand, 47653 - 47573
Alignment:
Q  201 gctaaaaataacaaattaatttgagcaggacaatgctcatataacatcaaagaataacctcttatcacatgtcatattcgcc 282  Q
    |||| |||||| ||||||| ||||  || ||||||||||||||| ||||||||| ||||||  |||||||||||||||||||    
T  47653 gctagaaataaaaaattaacttgaagagtacaatgctcatataatatcaaagaaaaacctc-catcacatgtcatattcgcc 47573  T

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