View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12791_low_7 (Length: 264)

Name: NF12791_low_7
Description: NF12791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12791_low_7
NF12791_low_7
[»] chr4 (30 HSPs)
chr4 (70-167)||(19374124-19374221)
chr4 (93-167)||(9488348-9488422)
chr4 (86-210)||(9538752-9538875)
chr4 (93-167)||(4546865-4546939)
chr4 (98-168)||(11421792-11421862)
chr4 (95-167)||(32637287-32637359)
chr4 (17-71)||(4546633-4546687)
chr4 (29-71)||(9538541-9538583)
chr4 (93-167)||(15462303-15462377)
chr4 (93-167)||(28917201-28917275)
chr4 (93-167)||(34976354-34976428)
chr4 (93-189)||(19363208-19363304)
chr4 (79-167)||(30039930-30040018)
chr4 (95-144)||(5617159-5617209)
chr4 (29-71)||(9488130-9488172)
chr4 (29-71)||(10677079-10677121)
chr4 (29-71)||(10890719-10890761)
chr4 (17-71)||(19373916-19373970)
chr4 (29-71)||(30040167-30040209)
chr4 (11-55)||(2677576-2677620)
chr4 (11-55)||(3368718-3368762)
chr4 (11-55)||(4675678-4675722)
chr4 (11-55)||(5870980-5871024)
chr4 (11-55)||(15462065-15462109)
chr4 (11-55)||(15815584-15815628)
chr4 (11-55)||(17299654-17299698)
chr4 (11-55)||(18110738-18110782)
chr4 (11-55)||(18163725-18163769)
chr4 (11-55)||(20244500-20244544)
chr4 (11-55)||(26532176-26532220)
[»] chr3 (11 HSPs)
chr3 (80-186)||(26817080-26817186)
chr3 (93-167)||(25978153-25978227)
chr3 (93-167)||(15316602-15316676)
chr3 (93-167)||(21399596-21399670)
chr3 (94-167)||(14147821-14147894)
chr3 (93-167)||(15845962-15846036)
chr3 (11-55)||(12300473-12300517)
chr3 (11-55)||(15846230-15846274)
chr3 (11-55)||(21034802-21034846)
chr3 (11-55)||(21399356-21399400)
chr3 (11-55)||(55427584-55427628)
[»] chr7 (24 HSPs)
chr7 (100-167)||(18258550-18258617)
chr7 (93-208)||(41680353-41680468)
chr7 (93-163)||(34129375-34129445)
chr7 (93-167)||(10666490-10666564)
chr7 (70-167)||(24442802-24442901)
chr7 (93-208)||(47166245-47166360)
chr7 (70-167)||(31189799-31189896)
chr7 (88-167)||(19389338-19389418)
chr7 (100-167)||(19392855-19392922)
chr7 (93-167)||(8465801-8465875)
chr7 (29-71)||(18258801-18258843)
chr7 (113-167)||(19231710-19231764)
chr7 (17-71)||(19393104-19393158)
chr7 (93-167)||(28131364-28131438)
chr7 (17-55)||(47166553-47166591)
chr7 (29-66)||(15168977-15169014)
chr7 (11-55)||(2205115-2205159)
chr7 (11-55)||(8465563-8465607)
chr7 (11-55)||(15730314-15730358)
chr7 (11-55)||(18139033-18139077)
chr7 (11-55)||(18400667-18400711)
chr7 (11-55)||(18407651-18407695)
chr7 (31-71)||(34129158-34129198)
chr7 (11-55)||(48808191-48808235)
[»] chr5 (17 HSPs)
chr5 (93-204)||(9811122-9811233)
chr5 (93-204)||(12703363-12703474)
chr5 (93-204)||(12764379-12764490)
chr5 (101-167)||(39428249-39428315)
chr5 (93-165)||(5098449-5098521)
chr5 (88-164)||(28719134-28719211)
chr5 (108-167)||(25804811-25804870)
chr5 (93-167)||(39535983-39536057)
chr5 (131-204)||(7864825-7864898)
chr5 (29-66)||(17282965-17283002)
chr5 (93-166)||(20941829-20941902)
chr5 (11-55)||(32462-32506)
chr5 (11-55)||(12789358-12789402)
chr5 (11-55)||(20941591-20941635)
chr5 (11-55)||(23546485-23546529)
chr5 (11-55)||(24933001-24933045)
chr5 (11-55)||(25805079-25805123)
[»] chr2 (8 HSPs)
chr2 (93-167)||(37443968-37444042)
chr2 (84-167)||(15341469-15341552)
chr2 (77-120)||(29801257-29801300)
chr2 (79-125)||(20686887-20686933)
chr2 (93-167)||(24228640-24228714)
chr2 (93-167)||(24763099-24763173)
chr2 (11-55)||(24249727-24249771)
chr2 (11-55)||(30174940-30174984)
[»] chr8 (16 HSPs)
chr8 (86-167)||(18836139-18836220)
chr8 (93-204)||(2962316-2962427)
chr8 (93-167)||(6431689-6431763)
chr8 (93-167)||(26652717-26652791)
chr8 (93-208)||(22658878-22658994)
chr8 (93-167)||(21970135-21970209)
chr8 (93-167)||(26241830-26241904)
chr8 (108-163)||(25612012-25612067)
chr8 (17-55)||(2962625-2962663)
chr8 (11-55)||(21917239-21917283)
chr8 (11-55)||(25611759-25611803)
chr8 (11-55)||(27007212-27007256)
chr8 (11-55)||(27014355-27014399)
chr8 (11-55)||(27880182-27880226)
chr8 (11-55)||(28020363-28020407)
chr8 (11-55)||(45533968-45534012)
[»] chr6 (15 HSPs)
chr6 (93-204)||(33317667-33317778)
chr6 (93-163)||(18019259-18019329)
chr6 (93-167)||(19219321-19219395)
chr6 (29-71)||(10358732-10358774)
chr6 (126-208)||(14075315-14075397)
chr6 (93-167)||(19734672-19734746)
chr6 (29-71)||(20736007-20736049)
chr6 (131-204)||(8613753-8613826)
chr6 (11-55)||(1585803-1585847)
chr6 (11-55)||(16789634-16789678)
chr6 (11-55)||(18019523-18019567)
chr6 (11-55)||(22859583-22859627)
chr6 (127-167)||(27507776-27507816)
chr6 (127-167)||(27524990-27525030)
chr6 (11-55)||(27525256-27525300)
[»] scaffold0086 (1 HSPs)
scaffold0086 (93-167)||(54566-54640)
[»] chr1 (18 HSPs)
chr1 (93-167)||(43801791-43801865)
chr1 (93-206)||(35936126-35936239)
chr1 (93-165)||(636773-636845)
chr1 (93-167)||(47666911-47666985)
chr1 (98-167)||(28134149-28134218)
chr1 (11-72)||(43802042-43802103)
chr1 (11-55)||(9456679-9456723)
chr1 (11-55)||(9460775-9460819)
chr1 (11-55)||(14482453-14482497)
chr1 (11-55)||(19706133-19706177)
chr1 (11-55)||(20390934-20390978)
chr1 (11-55)||(20779340-20779384)
chr1 (11-55)||(22613056-22613100)
chr1 (93-157)||(22613293-22613357)
chr1 (11-55)||(22669952-22669996)
chr1 (11-55)||(28134417-28134461)
chr1 (11-55)||(42816684-42816728)
chr1 (11-55)||(47667179-47667223)
[»] scaffold0466 (1 HSPs)
scaffold0466 (70-167)||(10311-10408)
[»] scaffold0111 (1 HSPs)
scaffold0111 (70-167)||(27319-27415)
[»] scaffold0389 (1 HSPs)
scaffold0389 (93-167)||(964-1038)
[»] scaffold0112 (2 HSPs)
scaffold0112 (93-167)||(985-1059)
scaffold0112 (11-55)||(747-791)
[»] scaffold0069 (1 HSPs)
scaffold0069 (93-167)||(28-102)
[»] scaffold0001 (1 HSPs)
scaffold0001 (93-167)||(138134-138208)
[»] scaffold0022 (1 HSPs)
scaffold0022 (93-167)||(73620-73694)
[»] scaffold0017 (1 HSPs)
scaffold0017 (93-167)||(128298-128372)
[»] scaffold0375 (1 HSPs)
scaffold0375 (17-61)||(15761-15805)
[»] scaffold0264 (1 HSPs)
scaffold0264 (11-55)||(3370-3414)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-55)||(120293-120337)


Alignment Details
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 19374124 - 19374221
Alignment:
Q  70 ttagtttgcaaaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| ||| || |||||||| ||||||||||||||||||| |||||||||||| ||||||||| || ||| | | |||||||||||||||||||||    
T  19374124 ttagttagcagaaggctaaatgcgttaatgggcttacggaagaccaatagtgatttctgacttgcagaacacgctaggagttctataaatagaaccct 19374221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 9488348 - 9488422
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||    
T  9488348 gttattgggcttactgaagcccaatagtgacttctgacttgcagagcacacaaagagttctataaatataaccct 9488422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 9538752 - 9538875
Alignment:
Q  86 taaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggt 185  Q
    ||||||||||||  |||||||||||||||| |||||| | ||||||| | || |||||||  ||||||||||||||||||||   | |||||||||||||    
T  9538752 taaatgggttaacaggcttacggaagcccagtagtgactgctgactttcagaacacacaagaagttctataaatagaacccttgtgctgaagtcggaggt 9538851  T
Q  186 tgcaaatttttcagaaaccctagaa 210  Q
    | ||| ||||| | |||||||||||    
T  9538852 tacaagttttt-aaaaaccctagaa 9538875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 4546865 - 4546939
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||| ||||||||||||||| | ||||||||| ||||||| || |||||||||||||||||||||    
T  4546865 gttattgggcttactgaagcccaatagtgacttctgacttgcagagcacataaggagttctataaatagaaccct 4546939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 11421792 - 11421862
Alignment:
Q  98 tgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctc 168  Q
    ||||||||||||||||||||||  | | ||||||||| |||||||| | ||||||||||||||||||||||    
T  11421792 tgggcttacggaagcccaatagatacttctgacttgcagagcacactaggagttctataaatagaaccctc 11421862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 32637287 - 32637359
Alignment:
Q  95 taatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||||||||||| |||||||||| | ||||||||| ||||| |  | |||||||||||||| ||||||    
T  32637287 taatgggcttacggaagtccaatagtgacttctgacttgcagagcatattaggagttctataaatataaccct 32637359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 4546633 - 4546687
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||  ||||||||||||||||||||||||||||||| || |||| ||||    
T  4546633 aaaggtttcgttagatcacttgacattcttgtcacttggatagcaatgatgtgtt 4546687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 9538541 - 9538583
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  9538541 agatcagttgacgttcttgtcacttggataacagtgatctgtt 9538583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 15462303 - 15462377
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  15462303 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 15462377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 28917275 - 28917201
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  28917275 gttactgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 28917201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 34976354 - 34976428
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  34976354 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 34976428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 19363208 - 19363304
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgca 189  Q
    |||||||||||||| ||||||||||||||| | ||||| ||  || |||||   |||||||||||||| ||||||   | ||||||| |||||||||    
T  19363208 gttaatgggcttacagaagcccaatagtgaattctgacgtgtagaacacacttggagttctataaataaaacccttgtgctgaagtcagaggttgca 19363304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 30040018 - 30039930
Alignment:
Q  79 aaaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||||   |||| | ||||||||||||||  ||||||| |  |||||||| |||||||| | ||||| |||||||||||||||    
T  30040018 aaaatgctaaactcgttattaggcttacggaagcctgatagtgacttttgacttgcagagcacactaggagttatataaatagaaccct 30039930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 5617159 - 5617209
Alignment:
Q  95 taatgggcttacggaagcccaatagtgattac-tgacttgcggagcacaca 144  Q
    |||||||||||| ||||||||||||||||||| |||||||  |||||||||    
T  5617159 taatgggcttactgaagcccaatagtgattacttgacttgtagagcacaca 5617209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 9488130 - 9488172
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  9488130 agatcacttgacattcttgtcacttggatagcaatgatgtgtt 9488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 10677121 - 10677079
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||    
T  10677121 agatcacatgacattcttgtcacttggatagcagtgatgtgtt 10677079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 10890761 - 10890719
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||    
T  10890761 agatcacatgacattcttgtcacttggatagcagtgatgtgtt 10890719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 19373916 - 19373970
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||  |||| ||||||||||||||||||||||| || ||||||| ||||    
T  19373916 aaaggtttcgttagagcacttgacattcttgtcacttgggtagcagtgatgtgtt 19373970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 30040209 - 30040167
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  30040209 agatcacttgacattcttgtcacttggatagcaatgatgtgtt 30040167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 2677576 - 2677620
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  2677576 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 2677620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 3368762 - 3368718
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  3368762 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 3368718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 4675722 - 4675678
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  4675722 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 4675678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 5870980 - 5871024
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  5870980 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 5871024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 15462065 - 15462109
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| ||||||||||  ||||||||||||||| |||||||||||    
T  15462065 atcatgaaaggtttcatcagatcacttgacatttttgtcacttgg 15462109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 15815584 - 15815628
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  15815584 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 15815628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 17299698 - 17299654
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  17299698 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 17299654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 18110782 - 18110738
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18110782 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18110738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18163725 - 18163769
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18163725 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18163769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20244500 - 20244544
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  20244500 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 20244544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 26532176 - 26532220
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  26532176 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 26532220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 26817080 - 26817186
Alignment:
Q  80 aaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtc 179  Q
    |||||||||||| |||||||||||||||||| ||||||| || || ||||||| | || ||||||| ||||||||| |||||||||||   |||||||||    
T  26817080 aaatgctaaatgtgttaatgggcttacggaatcccaataatgttttctgacttacagaacacacaaggagttctatcaatagaacccttgtgttgaagtc 26817179  T
Q  180 ggaggtt 186  Q
     ||||||    
T  26817180 agaggtt 26817186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 25978227 - 25978153
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||| ||| |||||| |||| | ||||||||| |||||||||| |||||||||||||||||||||    
T  25978227 gttattgggcttactgaaacccaattgtgacttctgacttgcagagcacacaaggagttctataaatagaaccct 25978153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 15316676 - 15316602
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||| ||||||||||||||  | |||| |||| ||| |||||| |||||||||||||||||||||    
T  15316676 gttattgggcttactgaagcccaatagtggcttctgaattgcagagaacacaaggagttctataaatagaaccct 15316602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 21399596 - 21399670
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  21399596 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 21399670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 14147821 - 14147894
Alignment:
Q  94 ttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||||||||||||| ||||||||| | ||||||||  |||||||  | || ||||||||||| ||||||    
T  14147821 ttaatgggcttacggaagctcaatagtgacttctgacttgtagagcacaataggatttctataaatacaaccct 14147894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 15846036 - 15845962
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||| ||||||||    
T  15846036 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaagagaaccct 15845962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 12300473 - 12300517
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  12300473 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 12300517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 15846274 - 15846230
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  15846274 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 15846230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21034802 - 21034846
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  21034802 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 21034846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21399356 - 21399400
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  21399356 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 21399400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 55427584 - 55427628
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  55427584 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 55427628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 18258617 - 18258550
Alignment:
Q  100 ggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||| ||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||    
T  18258617 ggcttactgaagcccaatagtgacttctgacttgcagagcacacaaggagttctataaatagaaccct 18258550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 41680468 - 41680353
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||  |||| ||||||||| || ||||||||| |||||||||| |||||||||||||||||||||   ||||||||  ||||||| |  |    
T  41680468 gttattgggcttaatgaagtccaatagtggtttctgacttgcagagcacacaaggagttctataaatagaaccctagtgttgaagtttgaggttgtacgt 41680369  T
Q  193 ttttcagaaaccctag 208  Q
    |||| |||||||||||    
T  41680368 ttttgagaaaccctag 41680353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 34129375 - 34129445
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaa 163  Q
    |||| ||||||||| ||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||    
T  34129375 gttattgggcttactgaagcccaatagtggcttctgacttgcagagcacacaaggagttctataaatagaa 34129445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 10666564 - 10666490
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||||| |||||||| | ||||||||| |||||||| | |||||||||||||||||||||    
T  10666564 gttattgggcttaatgaagcctaatagtgacttctgacttgcagagcacactaggagttctataaatagaaccct 10666490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 24442901 - 24442802
Alignment:
Q  70 ttagtttgcaaaatgctaaatgggttaatgggcttac--ggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| |||||| |||||||| ||||||||||||||  | ||||||||||| || | ||||||| |  ||||||  | |||||||||||||||||||||    
T  24442901 ttagttagcaaaaggctaaatgagttaatgggcttacatgtaagcccaatagggacttctgacttccatagcacattaggagttctataaatagaaccct 24442802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 47166360 - 47166245
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||| ||| ||||||||||  | ||||||||| |||||||  | |||||||||||||||||||||   | | ||||  ||||||||| ||    
T  47166360 gttattgggcttactgaaacccaatagtggcttctgacttgcagagcacatgaggagttctataaatagaaccctagtgctaaagtttgaggttgcacat 47166261  T
Q  193 ttttcagaaaccctag 208  Q
    | || |||||||||||    
T  47166260 tgttgagaaaccctag 47166245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 31189896 - 31189799
Alignment:
Q  70 ttagtttgcaaaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| ||||||| |||||   ||||||| | ||||||| |||||| ||||| |  ||||||||  ||||||  |||||||||||||||||||||||    
T  31189896 ttagttagcaaaatactaaactcgttaatgagattacggaggcccaacagtgacttgtgacttgcaaagcacagtaagagttctataaatagaaccct 31189799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 19389338 - 19389418
Alignment:
Q  88 aatgggttaatgggcttacggaagcccaatagtgattac-tgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||||||||||||  |||||| |  | ||||||| |||||||| ||||||| ||  ||||||||||||||||||||    
T  19389338 aatgggttaatgggcttatagaagcctaggaatgattacctgacttgctgagcacataagtagttctataaatagaaccct 19389418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 19392922 - 19392855
Alignment:
Q  100 ggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| |||||||||||| ||||| | ||||||||  |||||||| | | |||||||||||||||||||    
T  19392922 ggctgacggaagcccaacagtgacttctgacttgtagagcacactaggtgttctataaatagaaccct 19392855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 8465801 - 8465875
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  |  ||||||||  ||||||||| |||||||||||||||||||||    
T  8465801 gttattgggcttagtgaagtccaatagtggcttatgacttgcatagcacacaaggagttctataaatagaaccct 8465875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 18258843 - 18258801
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||    
T  18258843 agatcacttgacattcttgtcacttgggtaacaatgatgtgtt 18258801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 19231710 - 19231764
Alignment:
Q  113 ccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||  | ||||||| | |||||||||| |||||||||||||||||||||    
T  19231710 ccaatagtggcttctgacttacagagcacacaaggagttctataaatagaaccct 19231764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 19393158 - 19393104
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    ||||||||||  |||||||||||||||||| ||||||||||| || |||| ||||    
T  19393158 aaaggtttcatcagatcacttgacattcttctcacttggatagcaatgatgtgtt 19393104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 28131364 - 28131438
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| |||| |||| ||||||||||||||| |  |||||||| |||||| | |  ||||||||||||||||||||    
T  28131364 gttattggggttactgaagcccaatagtgacttttgacttgctgagcacgctagaagttctataaatagaaccct 28131438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 47166591 - 47166553
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  47166591 aaaggtttcgttagatcacttgacattcttgtcacttgg 47166553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 15169014 - 15168977
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgat 66  Q
    ||||||||||||||||||||||||||| || |||||||    
T  15169014 agatcacttgacattcttgtcacttgggtagcagtgat 15168977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 2205115 - 2205159
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  2205115 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 2205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 8465563 - 8465607
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  8465563 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 8465607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 15730314 - 15730358
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  15730314 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 15730358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 18139077 - 18139033
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18139077 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18139033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18400667 - 18400711
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18400667 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18400711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18407651 - 18407695
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18407651 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18407695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 34129158 - 34129198
Alignment:
Q  31 atcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||||||||||||||||||||| || |||| ||||    
T  34129158 atcacttgacattcttgtcacttggatagcaatgatgtgtt 34129198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 48808235 - 48808191
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  48808235 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 48808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 9811233 - 9811122
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||| ||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||||||     ||||||  ||||||||| ||    
T  9811233 gttattgggcttactgaagcccaatagtggcttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcacat 9811134  T
Q  193 ttttcagaaacc 204  Q
    |||| |||||||    
T  9811133 ttttgagaaacc 9811122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 12703474 - 12703363
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||| ||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||||||     ||||||  ||||||||| ||    
T  12703474 gttattgggcttactgaagcccaatagtggcttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcacat 12703375  T
Q  193 ttttcagaaacc 204  Q
    |||| |||||||    
T  12703374 ttttgagaaacc 12703363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 12764490 - 12764379
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| |||| |||| ||||||||||||||  | ||||||||| |||||||||| |||||||||||||||||||||     ||||||  ||||||||| ||    
T  12764490 gttattgggattactgaagcccaatagtggcttctgacttgcagagcacacaaggagttctataaatagaaccctattactgaagtttgaggttgcacat 12764391  T
Q  193 ttttcagaaacc 204  Q
    |||| |||||||    
T  12764390 ttttgagaaacc 12764379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 39428249 - 39428315
Alignment:
Q  101 gcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| ||||||||||||||| | ||||||||| || ||||||| |||||||||||||||||||||    
T  39428249 gcttactgaagcccaatagtgacttctgacttgcagaacacacaaggagttctataaatagaaccct 39428315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 5098449 - 5098521
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaacc 165  Q
    |||| ||||||||| |||| |||||||||| | ||||||||| |||||||| | |||||||||||||||||||    
T  5098449 gttattgggcttactgaagtccaatagtgacttctgacttgcagagcacactaggagttctataaatagaacc 5098521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 28719211 - 28719134
Alignment:
Q  88 aatgggttaatgggcttacggaagcccaatagtgattac-tgacttgcggagcacacaaagagttctataaatagaac 164  Q
    |||||||||| |||||||  ||||||||||||||||||| ||  |||| ||||||||||  |||||||||||||||||    
T  28719211 aatgggttaacgggcttattgaagcccaatagtgattacttggtttgcagagcacacaagtagttctataaatagaac 28719134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 25804870 - 25804811
Alignment:
Q  108 gaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  25804870 gaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 25804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 39535983 - 39536057
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| |||||||| |||||||||||| |||   |||||||||  |||||||   |||||||||||||||||||||    
T  39535983 gttattgggcttatggaagcccaatactgaaatctgacttgcatagcacacttggagttctataaatagaaccct 39536057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 7864898 - 7864825
Alignment:
Q  131 ttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaatttttcagaaacc 204  Q
    |||| |||||||||| |||||||||||||||||||||   | ||||||  |||||||||  ||||| |||||||    
T  7864898 ttgcagagcacacaaggagttctataaatagaaccctattgctgaagtttgaggttgcacgtttttgagaaacc 7864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 17283002 - 17282965
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgat 66  Q
    ||||||||||||||||||||||||||| || |||||||    
T  17283002 agatcacttgacattcttgtcacttgggtagcagtgat 17282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 20941829 - 20941902
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccc 166  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||| |||||    
T  20941829 gttattgggcttaatgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatataaccc 20941902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 32462 - 32506
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  32462 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 32506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 12789402 - 12789358
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  12789402 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 12789358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 20941591 - 20941635
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  20941591 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 20941635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23546485 - 23546529
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  23546485 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 23546529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 24933045 - 24933001
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  24933045 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 24933001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 25805123 - 25805079
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  25805123 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 25805079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 37443968 - 37444042
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||||||||||||||||||| ||| | | ||||||| |||||||| | ||||||||||||| |||||||    
T  37443968 gttaatgggcttacggaagcccaataatgacttccgacttgcagagcacactaggagttctataaattgaaccct 37444042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 15341552 - 15341469
Alignment:
Q  84 gctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||| ||||||||| |||||| ||||||||| | ||| ||||||||| || ||||| | || ||||||||||||||||||    
T  15341552 gctaaatgcgttaatggggttacggtagcccaatattaatttctgacttgcagaacacactaggaattctataaatagaaccct 15341469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 29801257 - 29801300
Alignment:
Q  77 gcaaaatgctaaatgggttaatgggcttacggaagcccaatagt 120  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  29801257 gcaaaatgctaaatgggttaatgggcttacggaagtccaatagt 29801300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 20686933 - 20686887
Alignment:
Q  79 aaaatgctaaatgggttaatgggcttacggaagcccaatagtgatta 125  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||    
T  20686933 aaaaggctaaatgggttaatgggcttacggaagtccagtagtgatta 20686887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 24228714 - 24228640
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  |  |||||||| |||||||||| |||||||||||||||||||||    
T  24228714 gttattgggcttaatgaagtccaatagtggcttttgacttgcagagcacacaaggagttctataaatagaaccct 24228640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 24763173 - 24763099
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| |||||||||| ||||| |||||||| |  ||||||||  ||||||| | |||||||||||||||||||||    
T  24763173 gttattgggcttacgaaagcctaatagtgacttttgacttgcaaagcacactaggagttctataaatagaaccct 24763099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 24249771 - 24249727
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  24249771 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 24249727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 30174940 - 30174984
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  30174940 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 30174984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 18836139 - 18836220
Alignment:
Q  86 taaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| |||||||||||||||||||||||||| ||| | || |||||| || |||||   |||||||||||||||||||||    
T  18836139 taaatgagttaatgggcttacggaagcccaatattgaattctaacttgcagaacacacttggagttctataaatagaaccct 18836220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 2962427 - 2962316
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||| ||||||||||||||  | ||||||||  ||||||| || |||||||||||||||||||||   | ||||||  |||||||||  |    
T  2962427 gttattgggcttactgaagcccaatagtggcttctgacttgaagagcacataaggagttctataaatagaaccctattgctgaagtttgaggttgcacgt 2962328  T
Q  193 ttttcagaaacc 204  Q
    |||| |||||||    
T  2962327 tttttagaaacc 2962316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 6431689 - 6431763
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||| ||| ||||||||||  | ||||||||  |||||||||| |||||||||||||||||||||    
T  6431689 gttattgggcttactgaaacccaatagtggcttctgacttgaagagcacacaaggagttctataaatagaaccct 6431763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 26652791 - 26652717
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | ||||||||| |||||||||| |||||||||||||||||||||    
T  26652791 gttattgggcttagtgaagtccaatagtggcttctgacttgcagagcacacaaggagttctataaatagaaccct 26652717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 22658994 - 22658878
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||  ||||  ||||||||  | ||||||||  |||||||||| ||||||||||||||||||||| | | ||||||  ||||||||| ||    
T  22658994 gttattgggcttaatgaagttcaatagtggcttctgacttgtagagcacacaaggagttctataaatagaaccctaatgctgaagtttgaggttgcacat 22658895  T
Q  193 tttt-cagaaaccctag 208  Q
    ||||  |||||||||||    
T  22658894 ttttggagaaaccctag 22658878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 21970135 - 21970209
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  21970135 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 21970209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 26241830 - 26241904
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  26241830 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 26241904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 25612012 - 25612067
Alignment:
Q  108 gaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaa 163  Q
    |||| |||||||||| | |||||||||  ||||||||| |||||||||||||||||    
T  25612012 gaagtccaatagtgacttctgacttgcatagcacacaaggagttctataaatagaa 25612067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 2962663 - 2962625
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  2962663 aaaggtttcgttagatcacttgacattcttgtcacttgg 2962625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 21917239 - 21917283
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  21917239 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 21917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 25611759 - 25611803
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  25611759 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 25611803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27007256 - 27007212
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  27007256 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 27007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27014399 - 27014355
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  27014399 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 27014355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27880226 - 27880182
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  27880226 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 27880182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 28020407 - 28020363
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  28020407 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 28020363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 45534012 - 45533968
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  45534012 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 45533968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 33317667 - 33317778
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||| ||||||| ||||||  | ||||||||| ||||||||||  ||||||||||||||||||||   | ||||||  |||||||||  |    
T  33317667 gttattgggcttactgaagccccatagtggcttctgacttgcagagcacacaagaagttctataaatagaaccctattgctgaagtttgaggttgcacgt 33317766  T
Q  193 ttttcagaaacc 204  Q
    |||| |||||||    
T  33317767 ttttgagaaacc 33317778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 18019329 - 18019259
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaa 163  Q
    |||| ||||||||  |||| |||||||||| | |||||||||  |||||||||||||||||||||||||||    
T  18019329 gttattgggcttagtgaagtccaatagtgacttctgacttgcatagcacacaaagagttctataaatagaa 18019259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 19219321 - 19219395
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||||||||| ||| |||||||| | | ||||||||| || |||||   |||||||||||||||||||||    
T  19219321 gttaatgggcttacgaaagtccaatagtaaattctgacttgcagaacacacttggagttctataaatagaaccct 19219395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 10358774 - 10358732
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||| ||||||||||||||||||| ||||||| ||||    
T  10358774 agatcacttggcattcttgtcacttggatagcagtgatttgtt 10358732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 14075315 - 14075397
Alignment:
Q  126 ctgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaatttttcagaaaccctag 208  Q
    ||||||||| || ||||||| |||||||||||||||||||||   | ||||||  ||||||  | |||||| |||||||||||    
T  14075315 ctgacttgcagaacacacaaggagttctataaatagaaccctagtgctgaagtttgaggttttacatttttgagaaaccctag 14075397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 19734746 - 19734672
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||||||||||||||||||| | | | || |||||  |||| ||| | ||||||||| |||||||||||    
T  19734746 gttaatgggcttacggaagcccaataattacttcttacttggagagctcactaggagttctatgaatagaaccct 19734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 20736049 - 20736007
Alignment:
Q  29 agatcacttgacattcttgtcacttggataacagtgatctgtt 71  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  20736049 agatcacttgacattcttgtcacttggatagcaatgatgtgtt 20736007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 8613753 - 8613826
Alignment:
Q  131 ttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaatttttcagaaacc 204  Q
    |||| |||||||||| |||||||||||||||||||||   | ||||||  |||||||||  ||||| |||||||    
T  8613753 ttgcagagcacacaaggagttctataaatagaaccctattgctgaagtttgaggttgcacgtttttgagaaacc 8613826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 1585847 - 1585803
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  1585847 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 1585803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 16789634 - 16789678
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  16789634 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 16789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 18019567 - 18019523
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  18019567 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 18019523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 22859627 - 22859583
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  22859627 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 22859583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 27507816 - 27507776
Alignment:
Q  127 tgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  27507816 tgacttgcaaagcacataaagagttctataaatagaaccct 27507776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 27525030 - 27524990
Alignment:
Q  127 tgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  27525030 tgacttgcaaagcacataaagagttctataaatagaaccct 27524990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27525300 - 27525256
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  27525300 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 27525256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 54566 - 54640
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||| ||||| ||||||||||||||||| |||||||||  ||||||| | || ||||||||||||||||||    
T  54566 gttattggacttactgaagcccaatagtgatttctgacttgcaaagcacactaggatttctataaatagaaccct 54640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 43801865 - 43801791
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||||||  ||||  ||||||||| | |||||||||  ||||||||| |||||||||||||||||||||    
T  43801865 gttaatgggcttagagaagtacaatagtgacttctgacttgcatagcacacaaggagttctataaatagaaccct 43801791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 35936126 - 35936239
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccctcacgttgaagtcggaggttgcaaat 192  Q
    |||| ||||||||  |||| |||||||||| | |||||||||  ||||||||| ||||||||||||||||||| |   | ||||||  || |||||| ||    
T  35936126 gttattgggcttagtgaagtccaatagtgacttctgacttgcaaagcacacaaggagttctataaatagaaccatagtgctgaagtttgatgttgcacat 35936225  T
Q  193 ttttcagaaaccct 206  Q
    |||| |||||||||    
T  35936226 ttttgagaaaccct 35936239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 636773 - 636845
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaacc 165  Q
    |||| ||||||||  |||||| |||||||| | ||||||||| |||||||| | |||||||||||||||||||    
T  636773 gttattgggcttaatgaagcctaatagtgacttctgacttgcagagcacactaggagttctataaatagaacc 636845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 47666985 - 47666911
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  47666985 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 47666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 28134218 - 28134149
Alignment:
Q  98 tgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  28134218 tgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 28134149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 43802103 - 43802042
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttggataacagtgatctgtta 72  Q
    ||||| |||||||||  |||||||||| ||||||||||||||||| || || |||| |||||    
T  43802103 atcatgaaaggtttcgttagatcacttaacattcttgtcacttgggtagcaatgatgtgtta 43802042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 9456679 - 9456723
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  9456679 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 9456723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 9460775 - 9460819
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  9460775 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 9460819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 14482453 - 14482497
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  14482453 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 14482497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 19706177 - 19706133
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  19706177 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 19706133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 20390978 - 20390934
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  20390978 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 20390934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 20779384 - 20779340
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  20779384 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 20779340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 22613056 - 22613100
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  22613056 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 22613100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 157
Target Start/End: Original strand, 22613293 - 22613357
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataa 157  Q
    |||| ||||||||  |||| |||||||||| | |||||||||  ||||||||| |||||||||||    
T  22613293 gttattgggcttagtgaagtccaatagtgacttctgacttgcatagcacacaaggagttctataa 22613357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 22669996 - 22669952
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  22669996 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 22669952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 28134461 - 28134417
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  28134461 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 28134417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 42816728 - 42816684
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  42816728 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 42816684  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 47667223 - 47667179
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  47667223 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 47667179  T

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Target: scaffold0466 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 10408 - 10311
Alignment:
Q  70 ttagtttgcaaaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||| ||||||| |||||   |||| || ||||||||||| |||||||||| | |||||||||  ||||||| | ||||||||||| |||||||||    
T  10408 ttagttagcaaaatactaaactcgttattgtgcttacggaaggccaatagtgacttctgacttgcaaagcacactaggagttctataagtagaaccct 10311  T

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Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 27319 - 27415
Alignment:
Q  70 ttagtttgcaaaatgctaaatgggttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||||||||||||  |||||   |||| | ||||||||||||||||||||||| | ||||||||| |||||||| |  | ||||||||||||||||||    
T  27319 ttagtttgcaaaagactaaactcgttattcggcttacggaagcccaatagtgact-ctgacttgcagagcacactagaatttctataaatagaaccct 27415  T

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Target: scaffold0389 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 964 - 1038
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  964 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 1038  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 985 - 1059
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  985 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 1059  T

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Target: scaffold0112; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 747 - 791
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  747 atcatgaaaggtttcgtaagatcacttgacattcttgtcacttgg 791  T

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Target: scaffold0069 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 28 - 102
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  28 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 102  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 138208 - 138134
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||||||||||    
T  138208 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaatagaaccct 138134  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 73694 - 73620
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||  | |||||||||  ||||||||| |||||||||||||| ||||||    
T  73694 gttattgggcttagtgaagtccaatagtggcttctgacttgcatagcacacaaggagttctataaataaaaccct 73620  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 128298 - 128372
Alignment:
Q  93 gttaatgggcttacggaagcccaatagtgattactgacttgcggagcacacaaagagttctataaatagaaccct 167  Q
    |||| ||||||||  |||| |||||||||| | || |||||| ||||||| || || ||||||||||||||||||    
T  128298 gttattgggcttaatgaagtccaatagtgacttctaacttgcagagcacataaggaattctataaatagaaccct 128372  T

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Target: scaffold0375 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 15761 - 15805
Alignment:
Q  17 aaaggtttcaatagatcacttgacattcttgtcacttggataaca 61  Q
    |||||||||  |||||||| | |||||||||||||||||||||||    
T  15761 aaaggtttcgttagatcacatcacattcttgtcacttggataaca 15805  T

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Target: scaffold0264 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 3414 - 3370
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  3414 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 3370  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 120293 - 120337
Alignment:
Q  11 atcatcaaaggtttcaatagatcacttgacattcttgtcacttgg 55  Q
    ||||| |||||||||   |||||||||||||||||||||||||||    
T  120293 atcatgaaaggtttcgtcagatcacttgacattcttgtcacttgg 120337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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