View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12791_low_9 (Length: 240)
Name: NF12791_low_9
Description: NF12791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12791_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42769234 - 42769460
Alignment:
| Q |
1 |
ctgtatttgggtctggaaatgatatcaaagcattagttcctgtcatttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaa |
100 |
Q |
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| T |
42769234 |
ctgtatttgggtctggaaatgatatcaaagcattagttcctgtcatttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaa |
42769333 |
T |
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| Q |
101 |
agtgccaaagaaaattagttctaaggtggagctatgagggtgtaaagtccatgctattgaggcttgttgtgtaggaagattcatgcatttttgaaaggtt |
200 |
Q |
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| T |
42769334 |
agtgccaaagaaaattagttctaaggtggagctatgagggtgtaaagtccatgctattgaggcttgttgtgtaggaagattcatgcatttttgaaaggtt |
42769433 |
T |
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| Q |
201 |
ttagtggaagtttctgttgtgcagtga |
227 |
Q |
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| T |
42769434 |
ttagtggaagtttctgttgtgcagtga |
42769460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 2452263 - 2452083
Alignment:
| Q |
35 |
agttcctgtcatttgtggtgaagtagggttgataccaaatccaacccaaccagaaggtgaaatgaaagtgccaaagaaaattagttctaaggtggagcta |
134 |
Q |
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| T |
2452263 |
agttcctgtcatctccgatgaagttgggttgattccccatccaacccatccagaaggtgaaatgaaggttccaaagaagactagttctaaggtggagtta |
2452164 |
T |
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| Q |
135 |
tgagggtgtaaagtccatgctattgaggcttgttgtgtaggaagattcatgcatttttgaaaggttttagtggaagtttct |
215 |
Q |
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| T |
2452163 |
tgagggtagaaagtccatgctatagaggcttgttgggtgggaagattcatacatttttggaaggttttagtagaggtttct |
2452083 |
T |
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