View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_high_1 (Length: 425)
Name: NF12792_high_1
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 4 - 410
Target Start/End: Original strand, 54033837 - 54034243
Alignment:
| Q |
4 |
gagagatgttcttaacaatagacctatagggatgcaaaagtggatacccttaggtgataagagacacaacaattgttgactggctcaacaagaagatgtt |
103 |
Q |
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| T |
54033837 |
gagagatgttcttaacaatagacctatagggatgcaaaagtggacacccttaggtgataagagacacaacaattgttgactggctcaacaagaagatgtt |
54033936 |
T |
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| Q |
104 |
ctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttcataaggataggacaatatgatgccaatttcatagaaaaactccctcacatt |
203 |
Q |
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| T |
54033937 |
ctcaagtcttttatctcgcctacttgaaggggatgctcagagttccttcataaggatgggacaatatgatgccaatttcatagaaaaactccctcacatt |
54034036 |
T |
|
| Q |
204 |
atgaactgcaaagcctccgccaactcctgatttcaaacctccctggtagccatatcacgcaaaatcattccaaacatatgagccttcatgcattaactgc |
303 |
Q |
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| T |
54034037 |
atgaactgcaaagcctccgccaactcctgatttcaaacctctctagtagccatatcacgcaaaatcattccaaacatatgagccttcatgcattagctgc |
54034136 |
T |
|
| Q |
304 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
403 |
Q |
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| T |
54034137 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
54034236 |
T |
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| Q |
404 |
actaatt |
410 |
Q |
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| T |
54034237 |
actaatt |
54034243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 31780484 - 31780588
Alignment:
| Q |
304 |
ttctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggttaacccattctag |
403 |
Q |
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||||||||||||| |||| | ||||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| | | ||||||| |
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| T |
31780484 |
ttctttttctgacattagcatataagtcaaaaccatactgat---actggctctacaaaacttgtacaataaggcacatggatcggtcagcatattctag |
31780580 |
T |
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| Q |
404 |
actaattt |
411 |
Q |
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|||||||| |
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| T |
31780581 |
actaattt |
31780588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 390
Target Start/End: Original strand, 2243738 - 2243819
Alignment:
| Q |
305 |
tctttttctgactttaggaaataagccaaaaccataccgatcgaacttgctctacaaaacttgtacagtaaggcacatggatcggt |
390 |
Q |
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| T |
2243738 |
tctttttctgactttaggatacaagtcaaaaccatactgat---acttgctctgcaaaa-ttgtacaataaggcacatggatcggt |
2243819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 2243678 - 2243719
Alignment:
| Q |
257 |
atcacgcaaaatcattccaaacatatgagccttcatgcatta |
298 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
2243678 |
atcatgcaaaattatttcaaacatatgagccttcatgcatta |
2243719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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