View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_high_11 (Length: 246)
Name: NF12792_high_11
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 32881101 - 32880869
Alignment:
| Q |
1 |
aacaaaaacaaaaacaagctaggtttgttgtttttggctttactattgatagattttgattttcttggaaagcatctataactatggaatccataattta |
100 |
Q |
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| T |
32881101 |
aacaaaaacaaaaacaagctaggtttgttgtttttggctttactattgatagattttgattttcttggaaagcatctataactatggaatccataatgta |
32881002 |
T |
|
| Q |
101 |
tatataactattggctatagttataagatgcgaagtgttgatttctccatccaatgaaggctaatcttattgtcgatactgtatatttgacatattaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32881001 |
tatataactattggctatagttataagatgcgaagtgttgatttctccatccaatgaaggctaatcttatcgtcgatactgtatatttgacatattaaga |
32880902 |
T |
|
| Q |
201 |
acattttat-gttcaattggagggtttgaattg |
232 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
32880901 |
acattttatagttcaattggagggtttgaattg |
32880869 |
T |
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