View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_high_13 (Length: 233)
Name: NF12792_high_13
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 31458165 - 31458361
Alignment:
| Q |
17 |
ctgtcttaagacttgtttaaacaatacctgtgcagattcttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgt |
116 |
Q |
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| T |
31458165 |
ctgtcttaagacttgtttaaacaatacctgtgcagattcttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgt |
31458264 |
T |
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| Q |
117 |
tcataaaggactcgtttggtatgccagtcaacatggtcccaagtaagcatttccatcaatattttcatggtcataaattcataaataagtacagttc |
213 |
Q |
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| T |
31458265 |
tcataaaggactcgtttggtatgccagtcaacatggtcccaagtaagcattcccatcaatattttcatggtcataaattcataaataagtacagttc |
31458361 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 38464001 - 38463903
Alignment:
| Q |
65 |
acaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcataaaggactcgtttggtatgccagtcaacatggtcccaagtaag |
163 |
Q |
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| T |
38464001 |
acaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtcaacatggtaccaagtaag |
38463903 |
T |
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