View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_high_7 (Length: 271)
Name: NF12792_high_7
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 15839864 - 15839618
Alignment:
| Q |
15 |
catcagtgacaaatgatgcacacaacacacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttat |
114 |
Q |
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| T |
15839864 |
catcagtgacaaatgatgcacacaacacacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttat |
15839765 |
T |
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| Q |
115 |
agctgccttttgtaagttcatacaccatacctattcaatggtttcaacacgaaattaatgacttgacattaaaataaaaatacatgaaagagaaatatcg |
214 |
Q |
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| T |
15839764 |
agctgccttttgtaagttcatacaccatacctattcaatggtttcaacacgaaattaatgacttgacattaaaataaaaatacatgaaagagaaatatcg |
15839665 |
T |
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| Q |
215 |
tgacaattaaagacctagtaaatgctcaccgctcaacatgttctctg |
261 |
Q |
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| T |
15839664 |
tgacaattaaagacctagtaaatgctcaccgctcaacatgttctctg |
15839618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 53114752 - 53114843
Alignment:
| Q |
42 |
cacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttatagctgccttttgtaagttc |
133 |
Q |
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| T |
53114752 |
cacctgaagggtggagtgaagtctatttcaataggatctttatcaaccccatttgcatgatacttgattttatagcttccatttgtaagttc |
53114843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 149
Target Start/End: Original strand, 53109327 - 53109434
Alignment:
| Q |
42 |
cacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttatagctgccttttgtaagttcatacacca |
141 |
Q |
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| T |
53109327 |
cacctgaaaggtggagtgaagtctatttcaataggatctttatcaaccccatttgcatgatatttgattttatagcttccctttgtgagttcgtgaacca |
53109426 |
T |
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| Q |
142 |
tacctatt |
149 |
Q |
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|||||||| |
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| T |
53109427 |
tacctatt |
53109434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 53127158 - 53127248
Alignment:
| Q |
42 |
cacctgaatggtggagtaaagtcgatttcaataggatccttgtcaagaccatctgcatgatacttgattttatagctgccttttgtaagtt |
132 |
Q |
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| T |
53127158 |
cacctgaagggtggagtgaagtctatttcgataggatccttgtcaactccatttgaatgatattggattttatagcttccatttgtaagtt |
53127248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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