View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_high_9 (Length: 251)
Name: NF12792_high_9
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_high_9 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0377 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 39048879 - 39049118
Alignment:
| Q |
12 |
gcagagagttgcacgttagttagacaacttgtgagagagatgttaacgtcaaatatgatgtatatgttgaataacatataagtgagatgagcaataaaca |
111 |
Q |
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| T |
39048879 |
gcagagagttgcacattagttagacaacttgtgagacagatgttaacgtcaaatatgatgtatatgttgaataacatataagtgagatgagcaacaaaca |
39048978 |
T |
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| Q |
112 |
tgtaccaagatattggatgaaaatgtgatgtcaattttatttgtgtgttttctcttagtctaatgcgataatacaacccaacataggctccattaaaagt |
211 |
Q |
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| T |
39048979 |
tgtaccaagatattggatgaaaatgtgatgtcaattttatttgtgtgttttcacttagtctaatgcgataatacaacccaacataggcttcactgaaagt |
39049078 |
T |
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| Q |
212 |
ttcaacattatgatgattactttgttagttttttaatgtc |
251 |
Q |
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| T |
39049079 |
ttcaacattatgatgattacttaattagttttttaatgtc |
39049118 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 38292402 - 38292518
Alignment:
| Q |
78 |
ttgaataacatataagtgagatgagcaataaacatgtacc--aagatattggatgaaaatgtgatgtcaattttatttgtgtgttttctcttagtctaat |
175 |
Q |
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| T |
38292402 |
ttgaataacatataaatgagatgactcatatatatgttcctaaagattttggatgaaaatgtgatgtcaatcttatttgtgtggtttatcctagtctaat |
38292501 |
T |
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| Q |
176 |
gcgataatacaacccaa |
192 |
Q |
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| T |
38292502 |
gcaatgatacaacccaa |
38292518 |
T |
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Target: scaffold0377 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0377
Description:
Target: scaffold0377; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 13348 - 13287
Alignment:
| Q |
128 |
atgaaaatgtgatgtcaattttatttgtgtgttttctcttagtctaatgcgataatacaacc |
189 |
Q |
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| T |
13348 |
atgaaaatgtggtgtcaattttatttgtgtggtttctcttaacctaatacgacgatacaacc |
13287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 42079815 - 42079659
Alignment:
| Q |
75 |
atgttgaataacatataagtgagatgagcaataaacatgtacc--aagatattggatgaaaatgtgatgtcaattttatttgtgtgttttctcttagtct |
172 |
Q |
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| T |
42079815 |
atgttgaatatcatataagtgagatgaactatattcatatgcctaaaaaaattgtatgaaaatatggtgtcaatttcatttgtgtgatttctcttaacct |
42079716 |
T |
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| Q |
173 |
aatgcgataatacaacccaacataggctccattaaaagtttcaacattatgatgatt |
229 |
Q |
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| T |
42079715 |
aatacgacgatacaaccaaatgtaggctgcaccggaagtttcaacactatgatgatt |
42079659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 15618340 - 15618289
Alignment:
| Q |
151 |
tttgtgtgttttctcttagtctaatgcgataatacaacccaacataggctcc |
202 |
Q |
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| T |
15618340 |
tttgtgtgatttctcttagccttatgtgataatacaacctaacataggctcc |
15618289 |
T |
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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 11589 - 11533
Alignment:
| Q |
118 |
aagatattggatgaaaatgtgatgtcaattttatttgtgtgttttctcttagtctaa |
174 |
Q |
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| T |
11589 |
aagattttggatgaaaaagtgatgtcaatcttacttgtgtggttgctcttggtctaa |
11533 |
T |
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