View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_10 (Length: 299)
Name: NF12792_low_10
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 50412418 - 50412700
Alignment:
| Q |
8 |
aagcagagataaggatggtacttacaaggtactatattcggcttatgtattgccctttgtataagcctttgattttgattgtctatagcatttttatagt |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
50412418 |
aagcacagataaggatggtacttacaaggtactatattcggcttatgtattgccctttgtataagcttttgattttgattgtctattgcatttttatagt |
50412517 |
T |
|
| Q |
108 |
tatattatagttttcctgtctgttgtagattctaaaagagagttcagaaggacctgttgctgtaactgttcaacgaaacgaaataaaaagtgctctgtgc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50412518 |
tatattatagttttcctgtctgttgtagattctaaaagagagttcagaaggacctgttgctgtaactgttcaacgaaacgaaataaaaagtgctctgtgc |
50412617 |
T |
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| Q |
208 |
gatctgaaacttagtgcccaggacctgcaccgtaagactatagttgttaatgacaatgttaaggttctggat-gtccatctca |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50412618 |
gatctgaaacttagtgcccaggacctgcaccgtaagactatagttgttaatgacaatgttaaggttctggatggtccatctca |
50412700 |
T |
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Back To:
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Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 25797716 - 25797907
Alignment:
| Q |
8 |
aagcagagataaggatggtacttacaaggtactatattcggcttatgtattgccctttgtataagcctttgattttgattgtctatagcatttttatagt |
107 |
Q |
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||||| |||||| ||||||||||||||||||| ||||| | ||||| | || || ||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
25797716 |
aagcacagataaagatggtacttacaaggtacgatatttagtttatgcactgttctatgtataagcctttgattttgagtgtctagtgcatttttatagt |
25797815 |
T |
|
| Q |
108 |
tatattatagttttcctgtctgttgtagattctaaaagagagttcagaaggacctgttgctgtaactgttcaacgaaacgaaataaaaagtg |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| | | ||||| ||||| ||||||||||||| |||| |||||||||||| |
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| T |
25797816 |
tatatcatagttttcctgtctgttgtagattctaaaagagagtttaaacggaccagttgcagtaactgttcaacaaaacaaaataaaaagtg |
25797907 |
T |
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