View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_12 (Length: 280)
Name: NF12792_low_12
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 7883253 - 7883482
Alignment:
| Q |
32 |
taatggtgaaacaatgcaatgaagttttgtcacaaggcattggaaatatcttggttcaaagaaagatggacatgaatctgtcataagtgatgcgatgttt |
131 |
Q |
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| T |
7883253 |
taatggtgaaacaatgcaatgaagttttgtcacaaggcattggaaatatcttggttcaaagaaagatggacatgaatctgtcataagtgatgcgatgttt |
7883352 |
T |
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| Q |
132 |
gttccaagcatgaagagtagtaattcgataagtcttggtcaattacttgaaagaaattattcggtgaagatgagaggtaaagaattaaaggtcattgatg |
231 |
Q |
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| T |
7883353 |
gttccaagcatgaag---agtaattcgataagtcttggtcaattacttgaaagaaactattcggtgaagatgagaggtaaagaattaaatgtcattgatg |
7883449 |
T |
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| Q |
232 |
aaagtgaaagattgatcttgaaggaacctctat |
264 |
Q |
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| T |
7883450 |
aaagtgaaagattgatcttgaaggcacctctat |
7883482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 7898118 - 7898225
Alignment:
| Q |
157 |
cgataagtcttggtcaattacttgaaagaaattattcggtgaagatgagaggtaaagaattaaaggtcattgatgaaagtgaaagattgatcttgaagga |
256 |
Q |
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| T |
7898118 |
cgataagtcttggtcaattacttgaaagaaattattcggtgaagatgagaggtagagaattaaaggtcattgatgaaagtgaaagattgatcttgaaggc |
7898217 |
T |
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| Q |
257 |
acctctat |
264 |
Q |
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| T |
7898218 |
acctctat |
7898225 |
T |
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