View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_13 (Length: 272)
Name: NF12792_low_13
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 5113596 - 5113841
Alignment:
| Q |
18 |
gaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgatgaggatgacgacgagctagaacagtcttgtttgtgtctaggctact |
117 |
Q |
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| T |
5113596 |
gaaagctaagttgattgaatgttgcaagctcttaacactgctgttgatgacgatgaggatgacgacgagctagaagagtcttgtttgtgtctaggctact |
5113695 |
T |
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| Q |
118 |
tttgaagaagtttgtcatccaatggacaactctttggaatgcttataagaagaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaa |
217 |
Q |
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| T |
5113696 |
tttgaagaagtttgtcatccaatggacaactctttggaatgcttat---aagaacatgtgaaattttttgaatgaaaaagaagcacaagttctgaaacaa |
5113792 |
T |
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| Q |
218 |
agaattattgaacatgtgattaacttataaccttgtattcttctcactc |
266 |
Q |
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| T |
5113793 |
agaattattgaacatgcgattaacttataaccttgtattcttttcactc |
5113841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 38650711 - 38650772
Alignment:
| Q |
177 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
238 |
Q |
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| T |
38650711 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacaaagaattattgaacatgtgatt |
38650772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 38625665 - 38625726
Alignment:
| Q |
177 |
gaaattttttgaatgaaaaagaagcacaagttctgaaacaaagaattattgaacatgtgatt |
238 |
Q |
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| T |
38625665 |
gaaagtttttgagtgaaaaagcagctgaagatctgaaacagagaattattgaacatgtgatt |
38625726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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