View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_15 (Length: 255)
Name: NF12792_low_15
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_15 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 48911900 - 48911684
Alignment:
| Q |
21 |
gcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911900 |
gcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaac |
48911801 |
T |
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| Q |
121 |
cgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccac |
220 |
Q |
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| T |
48911800 |
cgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtgggtgctgctccac |
48911701 |
T |
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| Q |
221 |
gaagtgttggatggttg |
237 |
Q |
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||||||||||||||||| |
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| T |
48911700 |
gaagtgttggatggttg |
48911684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 48951927 - 48952063
Alignment:
| Q |
87 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
186 |
Q |
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|||||||||||||| || | ||| || |||||||||||||| | | ||| ||||| || ||||| ||||| || |||| | |||| || | | |||| |
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| T |
48951927 |
gattccatggcacatatggtaaagagtgagaaaccgttgaacacgaatctcggaatgtgcagcttctttgctagctcatcagcccacgggaataaaaaat |
48952026 |
T |
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| Q |
187 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
223 |
Q |
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| T |
48952027 |
ccgccacgatgcaatcaggtgggtgctgctccacgaa |
48952063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 6066 - 5853
Alignment:
| Q |
21 |
gcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaac |
120 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
6066 |
gcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaacagagagaaac |
5967 |
T |
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| Q |
121 |
cgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccac |
220 |
Q |
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| T |
5966 |
cgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgctgctccac |
5867 |
T |
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| Q |
221 |
gaagtgttggatgg |
234 |
Q |
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|||||||||||||| |
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| T |
5866 |
gaagtgttggatgg |
5853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 10049 - 9837
Alignment:
| Q |
22 |
caatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaacc |
121 |
Q |
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||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10049 |
caatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaacc |
9950 |
T |
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| Q |
122 |
gttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacg |
221 |
Q |
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|||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||||||||||||| |
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| T |
9949 |
gttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtgctgctccacg |
9850 |
T |
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| Q |
222 |
aagtgttggatgg |
234 |
Q |
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||||||||||||| |
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| T |
9849 |
aagtgttggatgg |
9837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
87 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
186 |
Q |
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|||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
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| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
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| Q |
187 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
223 |
Q |
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| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
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