View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_2 (Length: 579)
Name: NF12792_low_2
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 561
Target Start/End: Original strand, 26426648 - 26427203
Alignment:
| Q |
17 |
gatatcagtagatgaagtaaatttgtatacatattatatagctcaggtcttattttgcgagtgtgtgaatattacacctctctcagttcattttcagctt |
116 |
Q |
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| T |
26426648 |
gatatcagcagatgaagtaaatttgtatacatattatatagctcaggtcttattttgcgagtgtgtgaatattacacctctctcagttcattttcagctt |
26426747 |
T |
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| Q |
117 |
gcagttgagcacgctttaacttttcactgtgttcagcttgcaggcatagttgcctcttatcatgttcctgctgcatatgagtcacctgtagattggacag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26426748 |
gcagttgagcacgctttaacttttcactgtgttcagcttgcaggcatagttgcctcttatcatgttcctgctgcatatgagtaacctgtagattggacag |
26426847 |
T |
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| Q |
217 |
gaaataagcttacctggtgtttggatgtttctcaacttaatgttaagcaaatttcatactaagaaagtagtgatgcaataacatcgtctcgtcacagcac |
316 |
Q |
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| T |
26426848 |
gaaataagcttacctggtgtttggatgtttctcaacttaatgttaagcaaatctcatactaagaaagtagtgatgcaataacatcgtctcgtcacagcac |
26426947 |
T |
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| Q |
317 |
acaagaggtacataaccaccccaaaaagagtaatttacaaac-----------tcgatcaaattacactatcacttgattgaatagtgtgagtacaaatt |
405 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26426948 |
acatgaggtacataaccaccccaaaaagagtaatttacaaactctaattcacttcgatcaaattacactatcacttgattgaatagtgtaagtacaaatt |
26427047 |
T |
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| Q |
406 |
acgaaatatttgaattgtttaattaaataggggttatttgaattattttcataaagacaacttttaatctcaatcaaacaccaaaatattgtaagaagtc |
505 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26427048 |
acgaaatatttgaattgtttaaataaataggggttatttgaattattttcataaagacaacttttaatcttaatcaaacaccaaaatattgtaagaagtc |
26427147 |
T |
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| Q |
506 |
aataattttaattctatannnnnnnaatagataccagcttagcatgttcctcctga |
561 |
Q |
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| T |
26427148 |
aataattttaattctatatttttttaatagataccagcttagcatgttcctcctga |
26427203 |
T |
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