View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_20 (Length: 244)
Name: NF12792_low_20
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 39049293 - 39049527
Alignment:
| Q |
4 |
atctccttaatgcaaggatcattaggcacatgaactgatgagcctagacaaacaacttttgaaatcacaacagaccaccaattaatattaacacaatcaa |
103 |
Q |
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| T |
39049293 |
atctccttaatgcaaggatcattaggcacatgaactgatgagcctagacaaacaacttttgaaatcacaacagaccaccaattaatattaacacaatcaa |
39049392 |
T |
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| Q |
104 |
atatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacaaccactttaagttacaatgatcaagatttattagaagt |
203 |
Q |
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| T |
39049393 |
atatatgtatgtttctactataccatatcgtattaatcacattgataatggttgcaatgacaaccactttatgttacaatgatcaagatttattacaaat |
39049492 |
T |
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| Q |
204 |
tttaatcgcaatatgcacattactgatgtccatct |
238 |
Q |
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| T |
39049493 |
tttaatcacaatatgcacattactggtgtccatct |
39049527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 39046981 - 39047215
Alignment:
| Q |
4 |
atctccttaatgcaaggatcattaggcacatgaactgatgagcctagacaaacaacttttgaaatcacaacagaccaccaattaatattaacacaatcaa |
103 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
39046981 |
atctccttaatgcaaggatcattaggaacatgaactgatgagcctagacaaacaacttttgaaatcacagcagtccaccaattaatattgacacaatcaa |
39047080 |
T |
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| Q |
104 |
atatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacaaccactttaagttacaatgatcaagatttattagaagt |
203 |
Q |
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| T |
39047081 |
atatatgtatgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacacccactttatattacggtgatcaagatttattacaagt |
39047180 |
T |
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| Q |
204 |
tttaatcgcaatatgcacattactgatgtccatct |
238 |
Q |
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| T |
39047181 |
tttaatcacaatatgcacattactggtgttcatct |
39047215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 14722342 - 14722426
Alignment:
| Q |
113 |
tgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacaaccactttaagttacaatgatcaagatttatta |
198 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||| || |||||| ||||||| | |||| |||| |||||||||||| |
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| T |
14722342 |
tgtttctacattaccatatgatatttatcacattgataatggctg-aatgaccaccacttcacattacgatgaccaagatttatta |
14722426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 198
Target Start/End: Complemental strand, 17601850 - 17601766
Alignment:
| Q |
113 |
tgtttctacaataccatatcgtattaatcacattgataatggttgcaatgacaaccactttaagttacaatgatcaagatttatta |
198 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||| || |||||| ||||||| | |||| |||| |||||||||||| |
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| T |
17601850 |
tgtttctacattaccatatgatatttatcacattgataatggctg-aatgaccaccacttcacattacgatgaccaagatttatta |
17601766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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