View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12792_low_22 (Length: 228)

Name: NF12792_low_22
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12792_low_22
NF12792_low_22
[»] chr8 (5 HSPs)
chr8 (1-228)||(4322368-4322596)
chr8 (118-183)||(33978655-33978720)
chr8 (118-171)||(45294580-45294633)
chr8 (118-184)||(9491942-9492008)
chr8 (118-171)||(175316-175369)
[»] chr4 (5 HSPs)
chr4 (24-101)||(45724620-45724696)
chr4 (118-183)||(979369-979434)
chr4 (128-184)||(31984826-31984882)
chr4 (128-183)||(3850595-3850650)
chr4 (127-169)||(45724724-45724766)
[»] chr1 (2 HSPs)
chr1 (118-169)||(52128451-52128502)
chr1 (128-171)||(12037601-12037644)
[»] chr3 (4 HSPs)
chr3 (118-184)||(25373625-25373691)
chr3 (118-168)||(40740226-40740276)
chr3 (118-171)||(11467769-11467822)
chr3 (135-171)||(44002642-44002678)
[»] chr6 (2 HSPs)
chr6 (119-184)||(24608306-24608372)
chr6 (137-171)||(11574459-11574493)
[»] chr5 (4 HSPs)
chr5 (118-183)||(31068109-31068174)
chr5 (137-184)||(8433595-8433642)
chr5 (128-171)||(41842821-41842864)
chr5 (141-169)||(7337593-7337621)
[»] chr2 (1 HSPs)
chr2 (136-167)||(5558750-5558781)
[»] chr7 (2 HSPs)
chr7 (126-184)||(223551-223609)
chr7 (118-168)||(18944190-18944240)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4322368 - 4322596
Alignment:
Q  1 tcacgcgtgctaaagtaagcataaaccactacgctacatctacaaagtttaaatttatgatgcattttttatatatattcacttctacgggcagcatatt 100  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  4322368 tcacgcatgctaaagcaagcataaaccacgacgctacatctacaaagtctaaatttatgacgcattttttatatatatttacttctacgggcagcatatt 4322467  T
Q  101 tnnnnnnnnnnnnnnnn-ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctgtctaggccctcgtggt 199  Q
    |                 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||    
T  4322468 taaaaaaaaaaaaaaaaattgggccccaaaatttaggaggcccagctcaatagagctgtttgcaccccctcatggccggccttgtctaggccctcatggt 4322567  T
Q  200 tttagaattgagattagaattttgctctt 228  Q
    |||||||||||||||||| || |||||||    
T  4322568 tttagaattgagattagagttctgctctt 4322596  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 33978655 - 33978720
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctg 183  Q
    ||||||||| ||| || | |||| ||||||| |||||||||||||||||||||| ||| |||||||    
T  33978655 ttgggcctccaaaatttggaggctcagctcagtagagctgtttgcaccccctcaaggccggccctg 33978720  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 45294580 - 45294633
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    ||||||| | |||||| | |||||||||||| ||||||||||||||||||||||    
T  45294580 ttgggcccccaaattttggaggcccagctcattagagctgtttgcaccccctca 45294633  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 9491942 - 9492008
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctgt 184  Q
    ||||||| | ||| || ||||| |||||||| |||||||||||||||||||||| ||  ||||||||    
T  9491942 ttgggcccctaaaatttgaaggtccagctcagtagagctgtttgcaccccctcaaggacggccctgt 9492008  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 175369 - 175316
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||||||||||||    
T  175369 ttgggcctccaaattttgaaggcacagttcagtagagttgtttgcaccccctca 175316  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 45724620 - 45724696
Alignment:
Q  24 aaccactacgctacatctacaaagtttaaatttatgatgcattttttatatatattcacttctacgggcagcatattt 101  Q
    ||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||||| ||||||||||||    
T  45724620 aaccactgcgctacatctacaaagtctaaattaataatgcatttgttatatatattcacttctac-ggcagcatattt 45724696  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 979434 - 979369
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctg 183  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||||||| | ||| |||||||    
T  979434 ttgggcctccaaatttaggaggcccagctcagtagagctgtttgcacccccttaaggccggccctg 979369  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 31984826 - 31984882
Alignment:
Q  128 aaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctgt 184  Q
    |||||| | |||||| ||||| |||||||||||||||||||||| ||| ||||||||    
T  31984826 aaattttggaggcccggctcagtagagctgtttgcaccccctcaaggccggccctgt 31984882  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 3850650 - 3850595
Alignment:
Q  128 aaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctg 183  Q
    |||||| | |||||||||||| || ||||||||||||||||||| ||| |||||||    
T  3850650 aaattttggaggcccagctcagtatagctgtttgcaccccctcatggccggccctg 3850595  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 45724724 - 45724766
Alignment:
Q  127 aaaatttagaaggcccagctcaatagagctgtttgcaccccct 169  Q
    ||||||||| |||| |||||||||||| |||||||||||||||    
T  45724724 aaaatttaggaggctcagctcaatagaactgtttgcaccccct 45724766  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 52128451 - 52128502
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccct 169  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  52128451 ttgggcctccaaatttaggaggcccagcccaatagagctgtttgcaccccct 52128502  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 12037644 - 12037601
Alignment:
Q  128 aaatttagaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    |||||| | |||||||||||| ||||||||||||||||||||||    
T  12037644 aaattttggaggcccagctcagtagagctgtttgcaccccctca 12037601  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 25373625 - 25373691
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctgt 184  Q
    ||||||| |||||||| | |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  25373625 ttgggccccaaaattttggaggcccagctcagtagagctgtttgcaccccctcatggtcggccctgt 25373691  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 40740276 - 40740226
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccc 168  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  40740276 ttgggcctcaaaatttaggaggcccaactcagtagagctgtttgcaccccc 40740226  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 11467822 - 11467769
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    |||||||  ||||||| |||||||||||||| ||||||||||||||||||||||    
T  11467822 ttgggccctaaaattttgaaggcccagctcagtagagctgtttgcaccccctca 11467769  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 44002678 - 44002642
Alignment:
Q  135 gaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  44002678 gaaggcccagctccatagagctgtttgcactccctca 44002642  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 24608306 - 24608372
Alignment:
Q  119 tgggcctcaaaatttagaaggcccagctcaatagagctgtttgca-ccccctcacggctggccctgt 184  Q
    |||||| |||||||| | |||||||||||| |||||||||||||| |||||||| ||| ||||||||    
T  24608306 tgggccccaaaattttggaggcccagctcagtagagctgtttgcacccccctcatggccggccctgt 24608372  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 11574493 - 11574459
Alignment:
Q  137 aggcccagctcaatagagctgtttgcaccccctca 171  Q
    |||||||||||| ||||||||||||||||||||||    
T  11574493 aggcccagctcagtagagctgtttgcaccccctca 11574459  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 31068109 - 31068174
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctg 183  Q
    ||||||| |||||||| | |||||||||||| ||||||||| |||||||||| | ||| |||||||    
T  31068109 ttgggccccaaaattttggaggcccagctcagtagagctgtctgcacccccttatggccggccctg 31068174  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 8433595 - 8433642
Alignment:
Q  137 aggcccagctcaatagagctgtttgcaccccctcacggctggccctgt 184  Q
    |||||||||||| |||||||||||||||||||||| ||  ||||||||    
T  8433595 aggcccagctcattagagctgtttgcaccccctcaaggacggccctgt 8433642  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 41842864 - 41842821
Alignment:
Q  128 aaatttagaaggcccagctcaatagagctgtttgcaccccctca 171  Q
    |||||| |||||||||||||| |||||||||||| |||||||||    
T  41842864 aaattttgaaggcccagctcagtagagctgtttgtaccccctca 41842821  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 7337621 - 7337593
Alignment:
Q  141 ccagctcaatagagctgtttgcaccccct 169  Q
    |||||||||||||||||||||||||||||    
T  7337621 ccagctcaatagagctgtttgcaccccct 7337593  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 5558750 - 5558781
Alignment:
Q  136 aaggcccagctcaatagagctgtttgcacccc 167  Q
    ||||||||||||||||||||||||||||||||    
T  5558750 aaggcccagctcaatagagctgtttgcacccc 5558781  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 223609 - 223551
Alignment:
Q  126 caaaatttagaaggcccagctcaatagagctgtttgcaccccctcacggctggccctgt 184  Q
    |||||||| | | |||||||||| ||||||||||||||||||||||  || ||||||||    
T  223609 caaaattttggacgcccagctcagtagagctgtttgcaccccctcattgccggccctgt 223551  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 18944240 - 18944190
Alignment:
Q  118 ttgggcctcaaaatttagaaggcccagctcaatagagctgtttgcaccccc 168  Q
    ||||||| |||||||| ||| ||||||||| |||||| |||||||||||||    
T  18944240 ttgggccccaaaatttcgaaagcccagctctatagagttgtttgcaccccc 18944190  T

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