View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12792_low_23 (Length: 228)

Name: NF12792_low_23
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12792_low_23
NF12792_low_23
[»] chr4 (10 HSPs)
chr4 (1-217)||(11179317-11179533)
chr4 (1-217)||(11189979-11190201)
chr4 (1-175)||(11192557-11192731)
chr4 (2-147)||(11160540-11160685)
chr4 (1-175)||(11174536-11174707)
chr4 (1-144)||(11182029-11182169)
chr4 (1-103)||(11166303-11166405)
chr4 (1-116)||(11197760-11197875)
chr4 (1-71)||(5646597-5646667)
chr4 (2-39)||(6948218-6948255)
[»] chr5 (1 HSPs)
chr5 (8-175)||(36686949-36687116)
[»] chr7 (1 HSPs)
chr7 (1-44)||(662227-662270)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11179317 - 11179533
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11179317 tttcttgcaatactcaataaccatagccaagatcttgccagttacattcgttaaagggattccagtgtcgttggcacactcctcgtcgatcaaatgcttg 11179416  T
Q  101 atcgtcttggattgcactgccaccgccttttcgattttaaaggtctcaccatcagaactcttcaggatgatcttcggtgatgatcccatgacttcgaaac 200  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11179417 atcgtctgggattgcattgccaccgccttttcgattttaaaggtctcgccatcagaactcttcaagatgatcttcggtgatgatcccatgacttcgaaac 11179516  T
Q  201 tctatatttttgtgtct 217  Q
    |||||||||||||||||    
T  11179517 tctatatttttgtgtct 11179533  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11189979 - 11190201
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| || |  | ||||||| ||||||| ||||||||||  ||| ||||||||||||||    
T  11189979 tttcttgcaatactcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattggcacactggtcgccgatcaaatgcttg 11190078  T
Q  101 atcgtcttggattgcactgccaccgccttttcgattttaaaggtctcaccatcagaactcttcaggatgatcttc------ggtgatgatcccatgactt 194  Q
    |||||||  ||||| ||||||||||||| |||||||| ||||||||| || ||||||||||||||||||||||||      | ||||||| |||||| ||    
T  11190079 atcgtctgcgattgaactgccaccgcctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatgccatgaatt 11190178  T
Q  195 cgaaactctatatttttgtgtct 217  Q
     ||||| ||| ||||||||||||    
T  11190179 agaaaccctaaatttttgtgtct 11190201  T

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Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 11192557 - 11192731
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    |||||||||||||||||||||||| |||||||||||||  ||||| || |  | |||||||||||||||||||||||| |||||||| |||||| |||||    
T  11192557 tttcttgcaatactcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacagtcatcgtctatcaaaagcttg 11192656  T
Q  101 atcgtcttggattgcactgccaccgccttttcgattttaaaggtctcaccatcagaactcttcaggatgatcttc 175  Q
    ||||||| |||||||| ||||||||||| ||| |||| ||||||||| || ||| ||||||| ||||||||||||    
T  11192657 atcgtctgggattgcattgccaccgcctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttc 11192731  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 11160685 - 11160540
Alignment:
Q  2 ttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttga 101  Q
    |||||||||| ||||||||||||||||||||||||||| || || ||||  | |||||||||| |||||| |||||| |  || ||||||||||||||||    
T  11160685 ttcttgcaatgctcaataaccatagccaagatcttgccggtaacgtttggaagagggattccactgtcgtcggcacaattgtcatcgatcaaatgcttga 11160586  T
Q  102 tcgtcttggattgcactgccaccgccttttcgattttaaaggtctc 147  Q
    |||| |  ||||  | ||||||||||||||| ||||  ||||||||    
T  11160585 tcgtttgagattctaatgccaccgccttttcaatttcgaaggtctc 11160540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 11174707 - 11174536
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |  | ||||||||||||||||| ||   |  |||| |||||||||||||||    
T  11174707 tttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgtcgg---aaacatcatcgatcaaatgcttg 11174611  T
Q  101 atcgtcttggattgcactgccaccgccttttcgattttaaaggtctcaccatcagaactcttcaggatgatcttc 175  Q
    || || |  ||||  | |||||| |||| |||||| | |||||| ||||| ||| ||||||| ||| ||||||||    
T  11174610 atagtttgagattctaatgccactgcctcttcgatatcaaaggtttcaccgtcataactcttgagggtgatcttc 11174536  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 11182169 - 11182029
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||| |  | ||||||||||||||||| ||   |  |||| |||||| ||||||||    
T  11182169 tttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgtcgg---aaacatcatcgatcgaatgcttg 11182073  T
Q  101 atcgtcttggattgcactgccaccgccttttcgattttaaaggt 144  Q
    ||||| |  ||||  |||||||| |||| |||||||| ||||||    
T  11182072 atcgtttgagattctactgccactgcctcttcgatttcaaaggt 11182029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11166303 - 11166405
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| || |  | |||||||||| ||| ||||| |||| | |||| ||||||||||| |    
T  11166303 tttcttgcaatactcaataaccatagccaagatcttgccggttacgttcgaaatagggattccaatgtggttggtacacccgtcgtggatcaaatgctcg 11166402  T
Q  101 atc 103  Q
    |||    
T  11166403 atc 11166405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11197760 - 11197875
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttg 100  Q
    |||||||||||||||||||| |||||||||||||||| |||||   || |  | || ||||||| | | ||||||||| |||| || |||||||||||||    
T  11197760 tttcttgcaatactcaataaacatagccaagatcttgtcagttgtgttcgaaatagtgattccatttttgttggcacattcattgttgatcaaatgcttg 11197859  T
Q  101 atcgtcttggattgca 116  Q
    ||||||| ||||||||    
T  11197860 atcgtctaggattgca 11197875  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5646667 - 5646597
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgt 71  Q
    |||||||||||||||||| ||||||||||  |||| ||  ||||| ||||  | |||||||||||||||||    
T  5646667 tttcttgcaatactcaattaccatagccagaatctcgctggttacgtttgagatagggattccagtgtcgt 5646597  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 6948218 - 6948255
Alignment:
Q  2 ttcttgcaatactcaataaccatagccaagatcttgcc 39  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  6948218 ttcttgcaatactcaataaccttagccaagaacttgcc 6948255  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 36686949 - 36687116
Alignment:
Q  8 caatactcaataaccatagccaagatcttgccagttacatttgttaaagggattccagtgtcgttggcacactcatcgtcgatcaaatgcttgatcgtct 107  Q
    ||||| ||||||||| | |||||||| |||| |||||||||||  | |||||||||| | | || | |||| ||||| ||||| ||| | |||||||| |    
T  36686949 caatattcaataacctttgccaagatgttgctagttacatttgaaagagggattccactatagtcgacacaatcatcctcgattaaaagtttgatcgttt 36687048  T
Q  108 tggattgcactgccaccgccttttcgattttaaaggtctcaccatcagaactcttcaggatgatcttc 175  Q
      |||| || |||||| ||||  ||||||| ||||||||| || || |||||||||||| ||||||||    
T  36687049 gtgattccaatgccactgcctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 662227 - 662270
Alignment:
Q  1 tttcttgcaatactcaataaccatagccaagatcttgccagtta 44  Q
    |||||||||||||||||||||| ||||||| |||||||| ||||    
T  662227 tttcttgcaatactcaataaccttagccaatatcttgcccgtta 662270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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