View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12792_low_25 (Length: 215)

Name: NF12792_low_25
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12792_low_25
NF12792_low_25
[»] scaffold0051 (2 HSPs)
scaffold0051 (1-102)||(20247-20348)
scaffold0051 (151-215)||(20134-20198)
[»] chr5 (17 HSPs)
chr5 (1-102)||(2786864-2786965)
chr5 (1-102)||(8688236-8688337)
chr5 (1-102)||(34954180-34954281)
chr5 (1-102)||(12144200-12144301)
chr5 (8-102)||(18171975-18172069)
chr5 (1-102)||(7662036-7662137)
chr5 (25-102)||(1081744-1081821)
chr5 (150-215)||(2786773-2786838)
chr5 (151-215)||(1081870-1081934)
chr5 (151-215)||(7662186-7662250)
chr5 (151-215)||(18172117-18172181)
chr5 (1-82)||(43147271-43147352)
chr5 (151-215)||(34954089-34954153)
chr5 (1-82)||(40033832-40033913)
chr5 (151-215)||(12144087-12144151)
chr5 (151-215)||(40033983-40034048)
chr5 (152-215)||(43147409-43147472)
[»] chr2 (28 HSPs)
chr2 (1-98)||(41192215-41192312)
chr2 (8-102)||(34619740-34619834)
chr2 (1-102)||(1888072-1888173)
chr2 (1-102)||(5814367-5814468)
chr2 (1-102)||(6728772-6728873)
chr2 (1-102)||(21083921-21084022)
chr2 (1-102)||(35151361-35151462)
chr2 (1-102)||(32737704-32737805)
chr2 (1-102)||(5290531-5290632)
chr2 (9-102)||(26257615-26257708)
chr2 (1-102)||(37057366-37057467)
chr2 (1-85)||(40642615-40642699)
chr2 (1-100)||(4616476-4616575)
chr2 (151-215)||(5814517-5814581)
chr2 (151-215)||(1887959-1888023)
chr2 (151-215)||(6728659-6728723)
chr2 (151-215)||(32737854-32737918)
chr2 (151-215)||(41192365-41192429)
chr2 (150-215)||(21083809-21083873)
chr2 (151-215)||(34619883-34619947)
chr2 (151-215)||(4616620-4616684)
chr2 (1-102)||(2194998-2195100)
chr2 (8-69)||(37891916-37891977)
chr2 (167-215)||(26257773-26257821)
chr2 (1-71)||(6903540-6903611)
chr2 (151-215)||(5290683-5290746)
chr2 (151-196)||(37057259-37057304)
chr2 (151-215)||(2195150-2195213)
[»] chr1 (23 HSPs)
chr1 (1-102)||(43138481-43138582)
chr1 (1-102)||(7014606-7014707)
chr1 (1-102)||(10308626-10308727)
chr1 (1-102)||(33686376-33686477)
chr1 (1-102)||(15399224-15399325)
chr1 (1-102)||(49150676-49150777)
chr1 (1-102)||(12926981-12927082)
chr1 (151-215)||(7014756-7014820)
chr1 (151-215)||(33686526-33686590)
chr1 (14-102)||(45053322-45053410)
chr1 (1-98)||(30858657-30858755)
chr1 (151-215)||(43138631-43138695)
chr1 (150-215)||(10308513-10308578)
chr1 (1-82)||(22605614-22605695)
chr1 (151-215)||(12926868-12926932)
chr1 (1-69)||(20447362-20447430)
chr1 (1-69)||(20533125-20533193)
chr1 (159-213)||(49150587-49150641)
chr1 (154-215)||(22605479-22605540)
chr1 (151-215)||(15399110-15399174)
chr1 (1-102)||(1671157-1671259)
chr1 (154-208)||(41871779-41871833)
chr1 (151-215)||(30858537-30858601)
[»] chr8 (19 HSPs)
chr8 (1-102)||(4322850-4322951)
chr8 (1-102)||(9039819-9039920)
chr8 (1-102)||(5912948-5913049)
chr8 (1-102)||(35161759-35161860)
chr8 (1-102)||(4759037-4759138)
chr8 (1-102)||(15739538-15739640)
chr8 (1-82)||(1217965-1218046)
chr8 (1-102)||(42182817-42182918)
chr8 (151-215)||(15739689-15739753)
chr8 (150-215)||(4322737-4322802)
chr8 (151-215)||(5913098-5913162)
chr8 (151-215)||(9039706-9039770)
chr8 (151-213)||(1217834-1217896)
chr8 (150-215)||(35161647-35161711)
chr8 (169-215)||(42182701-42182747)
chr8 (1-82)||(2766682-2766762)
chr8 (167-215)||(4759206-4759254)
chr8 (151-208)||(2766845-2766902)
chr8 (168-215)||(23810856-23810902)
[»] chr7 (15 HSPs)
chr7 (1-102)||(40144615-40144716)
chr7 (1-102)||(37450155-37450255)
chr7 (9-102)||(4034992-4035085)
chr7 (1-101)||(14678459-14678558)
chr7 (1-102)||(3742201-3742303)
chr7 (150-215)||(3742351-3742416)
chr7 (151-215)||(4035134-4035198)
chr7 (151-215)||(37450043-37450107)
chr7 (1-102)||(33803074-33803176)
chr7 (29-102)||(39284143-39284216)
chr7 (151-215)||(14678345-14678409)
chr7 (151-215)||(40144765-40144829)
chr7 (151-211)||(39284034-39284094)
chr7 (8-71)||(30362565-30362628)
chr7 (1-38)||(8261117-8261154)
[»] chr3 (13 HSPs)
chr3 (1-102)||(23029790-23029891)
chr3 (1-102)||(49741931-49742032)
chr3 (3-102)||(41650100-41650199)
chr3 (1-100)||(49501364-49501463)
chr3 (1-102)||(2447748-2447848)
chr3 (1-102)||(49303362-49303463)
chr3 (151-211)||(41649991-41650051)
chr3 (150-215)||(49501513-49501578)
chr3 (151-215)||(2447635-2447699)
chr3 (151-215)||(49303249-49303313)
chr3 (151-215)||(49742081-49742145)
chr3 (1-71)||(47067958-47068028)
chr3 (151-215)||(23029688-23029752)
[»] chr4 (29 HSPs)
chr4 (1-102)||(36046738-36046839)
chr4 (1-102)||(54703790-54703891)
chr4 (1-102)||(54808836-54808937)
chr4 (1-102)||(42119129-42119229)
chr4 (1-102)||(52032530-52032631)
chr4 (8-102)||(51242964-51243059)
chr4 (8-97)||(33985288-33985377)
chr4 (1-102)||(34939191-34939292)
chr4 (1-102)||(779279-779384)
chr4 (16-102)||(45042856-45042942)
chr4 (1-102)||(47020218-47020319)
chr4 (151-215)||(43502267-43502331)
chr4 (151-215)||(52789436-52789500)
chr4 (10-68)||(43502165-43502223)
chr4 (151-215)||(33985431-33985495)
chr4 (151-215)||(54808986-54809050)
chr4 (15-102)||(52789549-52789636)
chr4 (1-71)||(9242737-9242807)
chr4 (151-215)||(42119015-42119079)
chr4 (151-215)||(51242851-51242915)
chr4 (151-215)||(54703678-54703742)
chr4 (16-102)||(37694357-37694444)
chr4 (152-215)||(34939342-34939405)
chr4 (151-210)||(36046888-36046947)
chr4 (159-215)||(45042999-45043055)
chr4 (151-215)||(779438-779502)
chr4 (151-215)||(37694494-37694558)
chr4 (167-215)||(47020106-47020154)
chr4 (159-215)||(52032692-52032748)
[»] chr6 (7 HSPs)
chr6 (13-102)||(11599167-11599256)
chr6 (17-102)||(30633963-30634048)
chr6 (1-82)||(3514514-3514595)
chr6 (151-215)||(11599060-11599124)
chr6 (1-71)||(2419622-2419692)
chr6 (159-215)||(30634105-30634161)
chr6 (152-215)||(3515201-3515264)
[»] scaffold0753 (1 HSPs)
scaffold0753 (1-68)||(4205-4272)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-71)||(25793-25863)


Alignment Details
Target: scaffold0051 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 20348 - 20247
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20348 gagaaagaggggaagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggttgtataaggtatatggcacttaatgaggt 20249  T
Q  101 cc 102  Q
    ||    
T  20248 cc 20247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 20198 - 20134
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  20198 cattgactaccgtccaagaaacgtttgtgcttcaatttttaccaccggccaacttgcgcaagtta 20134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2786965 - 2786864
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  2786965 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatgacacttaatgaggt 2786866  T
Q  101 cc 102  Q
    ||    
T  2786865 cc 2786864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 8688337 - 8688236
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||    
T  8688337 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataatatatatagcacttaatgaggt 8688238  T
Q  101 cc 102  Q
    ||    
T  8688237 cc 8688236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34954281 - 34954180
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||    
T  34954281 gagaaagagggggagagagtgggaggagaaaatgtgagaaaaagaggaagtatgtgagggtttttataggtgatataaggtatatgacacttaatgaggt 34954182  T
Q  101 cc 102  Q
    ||    
T  34954181 cc 34954180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12144301 - 12144200
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  12144301 gagaaagagggggacagagtgggaggagaaaatgtgagaaaaagatgaagtatgtgagggttttcataggtggtataaggtatatggcacttaatgaggt 12144202  T
Q  101 cc 102  Q
    ||    
T  12144201 cc 12144200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 18171975 - 18172069
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  18171975 agggggggagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgtgggtttttataggtggtataaggtatatagcacttaatgaggtcc 18172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7662036 - 7662137
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  7662036 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagggagtatgtgagggtttttatagatggtataaggtatataacacttaataaggt 7662135  T
Q  101 cc 102  Q
    ||    
T  7662136 cc 7662137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 1081744 - 1081821
Alignment:
Q  25 ggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| || ||||||||||||    
T  1081744 ggagaaaatgtgaggaaaagaggaagtatgtgagggcttttataggtggtataaggtatatgtcatttaatgaggtcc 1081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 2786838 - 2786773
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  2786838 tcattgactaccgtccaaaaaatatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 2786773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 1081870 - 1081934
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  1081870 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagtta 1081934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 7662186 - 7662250
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7662186 cattgactaccgttcaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 7662250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 18172117 - 18172181
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18172117 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagtta 18172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43147271 - 43147352
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | |||||||    
T  43147271 gagaaagagggggagagattgggaggagataatgtgaggaaaagaggaagtatgtgagggtttttataagtgatttaaggta 43147352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 34954153 - 34954089
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  34954153 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccagccaacttgtgcaagtta 34954089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 40033832 - 40033913
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||| | | |||||||||||| |||||||    
T  40033832 gagaaagagggggggagagtgggaggagataatgtgaggaaaagatgaagtatgtgatggtatttataggtggtttaaggta 40033913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 12144151 - 12144087
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  12144151 cattgactaccgtccaagaaacgtttgtgcttcagtttttaacactgaccaacttgcgcaagtta 12144087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 40033983 - 40034048
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcag-tttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||||||| |||||    
T  40033983 cattgaccaccgtccaaaaaacatttgttcttcagttttttaccaccgaccaacttgcgcgagtta 40034048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 43147409 - 43147472
Alignment:
Q  152 attgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| | ||| ||| ||| ||||||  ||||||||||||||||||||||||||||| |||||    
T  43147409 attgaccatcgttcaaaaaatatttgtttttcagtttttaccaccggccaacttgcgcgagtta 43147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41192215 - 41192312
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgag 98  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41192215 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatggcacttaatgag 41192312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 34619740 - 34619834
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34619740 agggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgagggtttttataggtggtataaggtatatggcacttaatgaggtcc 34619834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 1888173 - 1888072
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  1888173 gagaaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatagcacttaatgaggt 1888074  T
Q  101 cc 102  Q
    ||    
T  1888073 cc 1888072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5814367 - 5814468
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5814367 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggatgtatgtgagaatttttataggtggtataaggtatatgacacttaatgaggt 5814466  T
Q  101 cc 102  Q
    ||    
T  5814467 cc 5814468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6728873 - 6728772
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  6728873 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatgacacttaattaggt 6728774  T
Q  101 cc 102  Q
    ||    
T  6728773 cc 6728772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21084022 - 21083921
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  21084022 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatataacacttaatgaggt 21083923  T
Q  101 cc 102  Q
    ||    
T  21083922 cc 21083921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 35151361 - 35151462
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  35151361 gagaaagagggggcgagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtgttataaggtatatggcacttaatgaggt 35151460  T
Q  101 cc 102  Q
    ||    
T  35151461 cc 35151462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 32737704 - 32737805
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  32737704 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatgtgagggtttttataggtggtataaagtatatagcacttaatgaggt 32737803  T
Q  101 cc 102  Q
    ||    
T  32737804 cc 32737805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5290531 - 5290632
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||||||||||||    
T  5290531 gagaaagagggggagagagttggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtagataacacttaatgaggt 5290630  T
Q  101 cc 102  Q
    ||    
T  5290631 cc 5290632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 26257615 - 26257708
Alignment:
Q  9 gggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||||| ||||    
T  26257615 gggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaagtagatagcacttaatgatgtcc 26257708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 37057467 - 37057366
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||| || ||||||||||||||    
T  37057467 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagagaaagtatttgagggtttttgtaggtggtataaggtagatagcacttaatgaggt 37057368  T
Q  101 cc 102  Q
    ||    
T  37057367 cc 37057366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 40642699 - 40642615
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatat 85  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40642699 gagaaagagggggagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatat 40642615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4616476 - 4616575
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||||||| ||  |||||||||||||    
T  4616476 gagaaagagggggagagagttggaggagaaaatgtaaggaaaagaggaagtatgtgagagtttttctaggtggtataaggtagataacacttaatgaggt 4616575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 5814517 - 5814581
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5814517 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 5814581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 1888023 - 1887959
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  1888023 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgggcaacttgcgcaagtta 1887959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 6728723 - 6728659
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  6728723 cattgactaccgtccaagaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaagtta 6728659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 32737854 - 32737918
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  32737854 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccatcggccaacttgcgcaagtta 32737918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 41192365 - 41192429
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  41192365 cattgactaccgtccaagaaacgtttgtgctttagtttttaccaccggccaacttgcgcaagtta 41192429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 21083873 - 21083809
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  21083873 tcattgactaccgtccaagaaacgtttgtgcttcag-ttttaccaccggccaacttgcgcaagtta 21083809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 34619883 - 34619947
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||    
T  34619883 cattgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaacttgtgcaagtta 34619947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 4616620 - 4616684
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  4616620 cattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 4616684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2194998 - 2195100
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta-tatggcacttaatgagg 99  Q
    |||||| || ||||||||||||||||||| |||||| ||||||||| |||||||||||  | |||||||||||| ||| |||  ||  ||||||||||||    
T  2194998 gagaaagagagggagagagtgggaggagataatgtgcggaaaagagaaagtatgtgagagtatttataggtggtttaaagtagcataacacttaatgagg 2195097  T
Q  100 tcc 102  Q
    |||    
T  2195098 tcc 2195100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 37891977 - 37891916
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttatag 69  Q
    |||||| ||||||||||||||| ||||||||||| | ||||||||||||||| | |||||||    
T  37891977 agggggggagagtgggaggagataatgtgaggaatataggaagtatgtgagggtatttatag 37891916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 26257773 - 26257821
Alignment:
Q  167 agaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| |||||||||||||||||||||||| | |||||||||||||||    
T  26257773 agaaacgtttgtgcttcagtttttaccaccgtctaacttgcgcaagtta 26257821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6903540 - 6903611
Alignment:
Q  1 gagaaatagggggagagagtggga-ggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||  | |||||||||    
T  6903540 gagaaagagggggagagagtgggaaggagataatgtgaggaaaagagggagtttgtgagagtatttataggt 6903611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 5290683 - 5290746
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| |||||||| ||||| | |||| ||||||||||||||||| ||||||||||| |||||    
T  5290683 cattgaccaccgtcca-gaaacgtctgtgtttcagtttttaccaccgtccaacttgcgcgagtta 5290746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 37057304 - 37057259
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccacc 196  Q
    ||||||| ||||||| | |||| |||||||||||||||||||||||    
T  37057304 cattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccacc 37057259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 2195150 - 2195213
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||||| |||| ||||| ||| ||||||||||| |||| ||||||||| |||||    
T  2195150 cattgaccaccgtccaa-aaacgtttgttctttagtttttaccatcggctaacttgcgcgagtta 2195213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 43138481 - 43138582
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  43138481 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatgacacttaatgaggt 43138580  T
Q  101 cc 102  Q
    ||    
T  43138581 cc 43138582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7014606 - 7014707
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  7014606 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagtgtttttataggtggtataaggtatatgacacttaatgaggt 7014705  T
Q  101 cc 102  Q
    ||    
T  7014706 cc 7014707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10308727 - 10308626
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  10308727 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggtatatagcacttaatgaggt 10308628  T
Q  101 cc 102  Q
    ||    
T  10308627 cc 10308626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 33686376 - 33686477
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||    
T  33686376 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgcgagggtttttataggtggtataaggtatatgccacttaatgaggt 33686475  T
Q  101 cc 102  Q
    ||    
T  33686476 cc 33686477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15399325 - 15399224
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||    
T  15399325 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatatgagggtttttataggtggtataaggtagatagcacttaatgaggt 15399226  T
Q  101 cc 102  Q
    ||    
T  15399225 cc 15399224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49150777 - 49150676
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  49150777 gagaaagagggggagaaagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtagatagcacttaatgaggt 49150678  T
Q  101 cc 102  Q
    ||    
T  49150677 cc 49150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12927082 - 12926981
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  12927082 gagaaagagggggaaagagtaggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataagatatacggcacttaatgaggt 12926983  T
Q  101 cc 102  Q
    ||    
T  12926982 cc 12926981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 7014756 - 7014820
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7014756 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 7014820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 33686526 - 33686590
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33686526 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttacgcaagtta 33686590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 45053322 - 45053410
Alignment:
Q  14 agagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||| ||  |||||||| ||||||    
T  45053322 agagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataatgtagataacacttaataaggtcc 45053410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30858755 - 30858657
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta-tatggcacttaatgag 98  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||| |||||||  || ||||||||||||    
T  30858755 gagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggtggtttaaggtagcatagcacttaatgag 30858657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 43138631 - 43138695
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  43138631 cattgactaccgtccaagaaacgtttgtgcttcagtttttatcaccggccaatttgcgcaagtta 43138695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 10308578 - 10308513
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||   |||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  10308578 tcattgactaccgttagagaaatgtttgtgcttcagtgtttaccaccggccaacttgcgcaagtta 10308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 22605695 - 22605614
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| |||||||||||||||||||||| |||||||||||||||| || ||||| ||  | |||||| ||||| |||||||    
T  22605695 gagaaagagggggagagagtgggaggagataatgtgaggaaaagagaaactatgtaagagtatttatacgtggtttaaggta 22605614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 12926932 - 12926868
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||   ||||||||||||||||||    
T  12926932 cattaactactgtccaagaaacgtttgtgcttcagtttttaccattagccaacttgcgcaagtta 12926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20447430 - 20447362
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttatag 69  Q
    |||||| |||||||| |||| |||||||| ||||||| ||||||||||||| ||||||| | |||||||    
T  20447430 gagaaagagggggagcgagtcggaggagataatgtgacgaaaagaggaagtttgtgagggtatttatag 20447362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20533193 - 20533125
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttatag 69  Q
    |||||| |||||||| |||| |||||||| ||||||| ||||||||||||| ||||||| | |||||||    
T  20533193 gagaaagagggggagcgagtcggaggagataatgtgacgaaaagaggaagtttgtgagggtatttatag 20533125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 49150641 - 49150587
Alignment:
Q  159 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagt 213  Q
    ||||||| |||||| ||| ||||| ||||||||||||||||||| ||||||||||    
T  49150641 accgtcccagaaacgtttatgcttaagtttttaccaccggccaatttgcgcaagt 49150587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 22605540 - 22605479
Alignment:
Q  154 tgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||| ||||||||| |||| | | | |||||||||||||||||||| |||||||||||||||    
T  22605540 tgaccaccgtccaaaaaacgtatattcttcagtttttaccaccggctaacttgcgcaagtta 22605479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 15399174 - 15399110
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||| | |||| ||||||||||| |||||||||||  |||||||||| ||||||    
T  15399174 cattgacaaccgtcccataaacgtttgtgcttcaatttttaccaccatccaacttgcgtaagtta 15399110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1671157 - 1671259
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta-tatggcacttaatgagg 99  Q
    |||||| |||||||| |||||| | |||| |||||||| |||||||||||| ||| ||| |  || |||||||| |||| ||  || |||||||||||||    
T  1671157 gagaaagagggggagtgagtggaatgagataatgtgagaaaaagaggaagtttgtaagggtacttgtaggtggtttaagttagcatagcacttaatgagg 1671256  T
Q  100 tcc 102  Q
    |||    
T  1671257 tcc 1671259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 41871833 - 41871779
Alignment:
Q  154 tgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcg 208  Q
    |||| ||||||||| |||| ||||| |||||||| ||||||||||||||| ||||    
T  41871833 tgaccaccgtccaaaaaacgtttgttcttcagttcttaccaccggccaacgtgcg 41871779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 30858601 - 30858537
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| | |||| || |||| ||||| |||||| ||| ||||||||||||||||||| |||||    
T  30858601 cattgaccatcgtctaaaaaacgtttgttcttcagctttgaccaccggccaacttgcgcgagtta 30858537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 4322951 - 4322850
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4322951 gagaaagagggggagagtgtgggaggagaaaatgtgaggaaaagaggaggtatgtgagggtttttataggtggtataaggtatatggcacttaatgaggt 4322852  T
Q  101 cc 102  Q
    ||    
T  4322851 cc 4322850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 9039920 - 9039819
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  9039920 gagaaaaagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtagatagcacttaatgaggt 9039821  T
Q  101 cc 102  Q
    ||    
T  9039820 cc 9039819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5912948 - 5913049
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  5912948 gagaaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtagatagcacttaatgaggt 5913047  T
Q  101 cc 102  Q
    ||    
T  5913048 cc 5913049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 35161860 - 35161759
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||    
T  35161860 gagaaagatggggagagagtgggaggagaaaatgcgaggaaaagaggaagtatgggagggtttttataggtggtataaggtatatgacacttaatgaggt 35161761  T
Q  101 cc 102  Q
    ||    
T  35161760 cc 35161759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4759037 - 4759138
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttatagg-tggtataaggtatatggcacttaatgagg 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||||||||    
T  4759037 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagg-tttttataggttggtataaggtagatagcacttaatgagg 4759135  T
Q  100 tcc 102  Q
    |||    
T  4759136 tcc 4759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 15739538 - 15739640
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtga-ggatttttataggtggtataaggtatatggcacttaatgagg 99  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||    
T  15739538 gagaaagaaggggagagagtgagaggagaaaatgtgaggaaaagaggaagtatgtgagggttttttataggtggtataaggtatatgacacttaatgagg 15739637  T
Q  100 tcc 102  Q
    |||    
T  15739638 tcc 15739640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1218046 - 1217965
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1218046 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggta 1217965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42182918 - 42182817
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| || ||||||||||||||    
T  42182918 gagaaagagggggggagagtgggaggagaaaatgtgaggaaaagaggaagcatgtgtgggtttttataggtggtataaggtagatagcacttaatgaggt 42182819  T
Q  101 cc 102  Q
    ||    
T  42182818 cc 42182817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 15739689 - 15739753
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15739689 cattgcctaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 15739753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 4322802 - 4322737
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4322802 tcattggctatcgcccaagaaacatttgtgcttcagtttttaccaccggtcaacttgcgcaagtta 4322737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 5913098 - 5913162
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5913098 cattggctaccgtcccagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagtta 5913162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 9039770 - 9039706
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  9039770 cattgactaccatccaagaaacgtttgtgctgtagtttttaccaccggccaacttgcgcaagtta 9039706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 1217896 - 1217834
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagt 213  Q
    ||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||    
T  1217896 cattgaccaccgtcccagaaacgtttgtgtttcagtttttaccaccggccaacttgcgcaagt 1217834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 35161711 - 35161647
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  35161711 tcattgactaccgtctaagaaacgtttgtgcttcag-ttttaccaccggtcaacttgcgcaagtta 35161647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 42182747 - 42182701
Alignment:
Q  169 aaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  42182747 aaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 42182701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2766682 - 2766762
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| |||||||| ||||||||||||| ||| ||||| ||||||||||| ||||||| | |||||||||||| |||||||    
T  2766682 gagaaagagggggagcgagtgggaggagataatatgagg-aaagaggaagtttgtgagggtatttataggtggtttaaggta 2766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 4759206 - 4759254
Alignment:
Q  167 agaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||    
T  4759206 agaaacgtttgtgcttcagtttttaccaccgtccaacttgcgcaagtta 4759254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 2766845 - 2766902
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcg 208  Q
    ||||||| ||||||||| |||| ||||| |||||||||| ||||| ||||||||||||    
T  2766845 cattgaccaccgtccaaaaaacgtttgttcttcagttttgaccactggccaacttgcg 2766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 23810856 - 23810902
Alignment:
Q  168 gaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||    
T  23810856 gaaacgtttgtgcttcagtttt-accaccgtccaacttgcgcaagtta 23810902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 40144615 - 40144716
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  40144615 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataacgtatatgacacttaatgaggt 40144714  T
Q  101 cc 102  Q
    ||    
T  40144715 cc 40144716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 37450255 - 37450155
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37450255 gagaaagagggggagagagtgagaggagaaaatgtgaggaaaaaaggaagtatgtgagg-gttttataggtggtataaggtatatggcacttaatgaggt 37450157  T
Q  101 cc 102  Q
    ||    
T  37450156 cc 37450155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 4034992 - 4035085
Alignment:
Q  9 gggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||    
T  4034992 gggggagagagtgggaggagaaaatgtgaggaaaagaagaagtatgtgagagtttttataggtggtatgtggtatatggcacttaatgaggtcc 4035085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14678558 - 14678459
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  14678558 gagaaagagggggagagagtgggaggagaaaatgtgaagaaa-gaggaagtatgtgagggtttttataggtggtataaggtagatagcacttaatgaggt 14678460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3742201 - 3742303
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtga-ggatttttataggtggtataaggtatatggcacttaatgagg 99  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||   || || ||||||||||||||||||||||||||||| |||||||||    
T  3742201 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtaaaggagggttttttataggtggtataaggtatatggcatttaatgagg 3742300  T
Q  100 tcc 102  Q
    |||    
T  3742301 tcc 3742303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 3742351 - 3742416
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3742351 tcattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 3742416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 4035134 - 4035198
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4035134 cattgactaccgtctaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 4035198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 37450107 - 37450043
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  37450107 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggtcaacttgcgcaagtta 37450043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 33803176 - 33803074
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta-tatggcacttaatgagg 99  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||| | ||||||| |||| |||||||  || |||||||||||||    
T  33803176 gagaaagagggggagagtgtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttatagatggtttaaggtaccatagcacttaatgagg 33803077  T
Q  100 tcc 102  Q
    |||    
T  33803076 tcc 33803074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 39284216 - 39284143
Alignment:
Q  29 aaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||  |||||||||||||||    
T  39284216 aaaatgtgaggaaaagaggaagtatgtgagggttttaataggtggtataaggtagataacacttaatgaggtcc 39284143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 14678409 - 14678345
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  14678409 cattgaccaccgtccaagaaacgtttgtgctgcagtttttaccaccggccaacttgcgcaagtta 14678345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 40144765 - 40144829
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  40144765 cattgactacggttcaaggaacgtttgtgcttcagtttttaccaccggccaacttgcgcaggtta 40144829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 39284094 - 39284034
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaa 211  Q
    ||||||| ||||||| | |||| |||||||||||||||||||||||| |||||||||||||    
T  39284094 cattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaa 39284034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 30362565 - 30362628
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||||||||||| ||||||| ||||||||||| | ||||||||||||||| | |||||||||    
T  30362565 agggggagagagtgcgaggagataatgtgaggaatataggaagtatgtgagggtatttataggt 30362628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8261154 - 8261117
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgag 38  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  8261154 gagaaagagggggagagagtgggaggagataatgtgag 8261117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23029891 - 23029790
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  23029891 gagaaatagggggaaagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtgtttataggtggtataaggtttatggcacttaatgaggt 23029792  T
Q  101 cc 102  Q
    ||    
T  23029791 cc 23029790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 49741931 - 49742032
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  49741931 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggtatatggcacttaataaggt 49742030  T
Q  101 cc 102  Q
    ||    
T  49742031 cc 49742032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 41650199 - 41650100
Alignment:
Q  3 gaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  41650199 gaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggtatatgacacttaatgaggtcc 41650100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49501364 - 49501463
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  49501364 gagaaagaggggtagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaggtatatgacacttaatgaggt 49501463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2447848 - 2447748
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||    
T  2447848 gagaaagagggggagagagtgggaggagaaaatgtgaggaaa-gaggaagtacgtgagggtttttataggtggtataaggtatatggcatttaatgaggt 2447750  T
Q  101 cc 102  Q
    ||    
T  2447749 cc 2447748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 49303463 - 49303362
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||  |||||||||||||    
T  49303463 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtgtgtgaggatttttataggtggtgtaaggtagataacacttaatgaggt 49303364  T
Q  101 cc 102  Q
    ||    
T  49303363 cc 49303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 41650051 - 41649991
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650051 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaa 41649991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 49501513 - 49501578
Alignment:
Q  150 tcattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  49501513 tcattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagtta 49501578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 2447699 - 2447635
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||    
T  2447699 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccactggccaacttgcgccagtta 2447635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 49303313 - 49303249
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  49303313 cattgattaccgtcctagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcgagtta 49303249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 49742081 - 49742145
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||  ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  49742081 cattgactattgtccaagaaacgtttgtgcttcagtttctaccaccgggcaacttgcgcaagtta 49742145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47067958 - 47068028
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||| |||||||||||||||||||||| | ||||||||| | ||||||||||||||| | |||||||||    
T  47067958 gagaaagagggggagagagtgggaggagatagtgtgaggaatataggaagtatgtgagggtatttataggt 47068028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 23029752 - 23029688
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||| || |||||||| ||||||||||||||| | ||||||||    
T  23029752 cattgactaccgtccaagaaacgtttctgtttcagtttctaccaccggccaactagggcaagtta 23029688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 36046738 - 36046839
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  36046738 gagaaagagtgggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagagtttttataggtggtataaggtatatgacacttaatgaggt 36046837  T
Q  101 cc 102  Q
    ||    
T  36046838 cc 36046839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 54703891 - 54703790
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  54703891 gagaaagagggggagagagtgggaggagagaatgtgaggaaaagaggaaatatgtgagggtttttataggtggtataaggtatatgacacttaatgaggt 54703792  T
Q  101 cc 102  Q
    ||    
T  54703791 cc 54703790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 54808836 - 54808937
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||    
T  54808836 gagaaagagggggagagagtggaaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttattggtggtataaggtatatgacacttaatgaggt 54808935  T
Q  101 cc 102  Q
    ||    
T  54808936 cc 54808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42119229 - 42119129
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||||    
T  42119229 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagg-tttttataggtggtataaggtagatagcacttagtgaggt 42119131  T
Q  101 cc 102  Q
    ||    
T  42119130 cc 42119129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 52032530 - 52032631
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  52032530 gagaaagagagggagagagtgggaggagaaaatgtgaggaaaagaggaattatgtgagggtttttaccggtggtataaggtatatggcacttaatgaggt 52032629  T
Q  101 cc 102  Q
    ||    
T  52032630 cc 52032631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 51243059 - 51242964
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggta-taaggtatatggcacttaatgaggtcc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||||    
T  51243059 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtatttataggtggtattaaggtatacgacacttaatgaggtcc 51242964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 33985288 - 33985377
Alignment:
Q  8 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatga 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||  ||||||||||    
T  33985288 agggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtgatataaggtagataacacttaatga 33985377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34939191 - 34939292
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||| |||||| ||  |||||||||||||||||||||| || ||||||||||||||    
T  34939191 gagaaagagggggagagagtgggagaagaaaatgtgaggataagaggaggtatgtaagagtttttataggtggtataaggtagatagcacttaatgaggt 34939290  T
Q  101 cc 102  Q
    ||    
T  34939291 cc 34939292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 779279 - 779384
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaag----tatgtgaggatttttataggtggtataaggtatatggcacttaatg 96  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||| |||||||||||| || ||||||||||    
T  779279 gagaaagagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatatatgtgagggtttttatagatggtataaggtagatagcacttaatg 779378  T
Q  97 aggtcc 102  Q
    | ||||    
T  779379 acgtcc 779384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 45042856 - 45042942
Alignment:
Q  16 agagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||  |||||||||||||||    
T  45042856 agagggggaggagaaaatgtgaggaaaagaggaagtatgtgagcgtttttataggtggtataaggtagataacacttaatgaggtcc 45042942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 47020319 - 47020218
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggt 100  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| | ||||||||||| ||  ||||||| |||||    
T  47020319 gagaaagagggggagagagtgggaggagaaaatgtgagaataagaggaagtatgtgagggtttttataagcggtataaggtagataacacttaacgaggt 47020220  T
Q  101 cc 102  Q
    ||    
T  47020219 cc 47020218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 43502267 - 43502331
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43502267 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 43502331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 52789500 - 52789436
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  52789500 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccgaccaacttgcgcaagtta 52789436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 43502165 - 43502223
Alignment:
Q  10 ggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttata 68  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43502165 ggggagagagtgggaggagaaaatgtgaggaaaataggaagtatgtgaggatttttata 43502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 33985431 - 33985495
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  33985431 cattgaccaccgtccaagaaacgtttgtgcttcagtttttactaccggccaacttgcgcaagtta 33985495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 54808986 - 54809050
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  54808986 cattgactaccgtccaagaaatgtttgtggttcagtttttaccaccggccaacttgcgcaagtta 54809050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 52789636 - 52789549
Alignment:
Q  15 gagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||| || |||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||  || |||| |||||||    
T  52789636 gagagtgagatgagaaaatatgaggaaaagaggaagtatgtgagggtttttataggtgttataaggtatatatcatttaaagaggtcc 52789549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9242737 - 9242807
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||    
T  9242737 gagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggt 9242807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 42119079 - 42119015
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  42119079 cattgaccaccgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 42119015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 51242915 - 51242851
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||||||||||||| |||| ||| |||||||||||| |||||||||||||||||||||||||    
T  51242915 cattgactaccgtccaaaaaacgtttatgcttcagttttgaccaccggccaacttgcgcaagtta 51242851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 54703742 - 54703678
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  54703742 cattaactaccgtccaagaaacgtttgttcttcagtttttaccaccgaccaacttgcgcaagtta 54703678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 37694357 - 37694444
Alignment:
Q  16 agagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta-tatggcacttaatgaggtcc 102  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||  ||  |||||||||||||||    
T  37694357 agagggggaggagataatgtgaggaaaagaggaagtatgttagggtttttataggtggtttaaggtagcatatcacttaatgaggtcc 37694444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 34939342 - 34939405
Alignment:
Q  152 attgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||    
T  34939342 attgaccaccgttcaagaaacgtttgtgctgcagtttttaccaccggccaacttgcggaagtta 34939405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 36046888 - 36046947
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgca 210  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  36046888 cattgactactgtccaagaaacgtttgtgtttcagtttttaccaccgaccaacttgcgca 36046947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 45042999 - 45043055
Alignment:
Q  159 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||    
T  45042999 accgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttacgcaagtta 45043055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 779438 - 779502
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| ||||||| | |||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  779438 cattgaccaccgtcccaaaaacgttaatgcttcaatttttaccaccggccaacttgcgcaagtta 779502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 37694494 - 37694558
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| | ||||| | |||| | ||||||||||||||||||||||||||||||||||| ||||    
T  37694494 cattgaccatcgtcccaaaaacgtctgtgcttcagtttttaccaccggccaacttgcgcaggtta 37694558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 47020154 - 47020106
Alignment:
Q  167 agaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  47020154 agaaacgtttttgcttcagtttttaccaccgtccaacttgcgcaagtta 47020106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 52032692 - 52032748
Alignment:
Q  159 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| | |||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  52032692 accgtcccaaaaacgtttgtgctttagtttttaccaccggccaatttgcgcaagtta 52032748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 11599256 - 11599167
Alignment:
Q  13 gagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  11599256 gagagagtgggatgagaaaatgtgaggaaaagaggaagtatgtgagggtttttataggtggtataaagtatatggcacttaatgaggtcc 11599167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 30633963 - 30634048
Alignment:
Q  17 gagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggtatatggcacttaatgaggtcc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||    
T  30633963 gagtgggaggagaaaatgtgaggaaaagaggaagtatgtgagggtttttatagatggtataaggtatataacacttaatgaggtcc 30634048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3514514 - 3514595
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggtggtataaggta 82  Q
    |||||| | |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||    
T  3514514 gagaaagacggggagagagtgggaggagaaaatgtcaggaaaagaggaagtatgtgcgggtttttataggtggtataaggta 3514595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 11599124 - 11599060
Alignment:
Q  151 cattgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11599124 cattgactaccgtccaagaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 11599060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2419622 - 2419692
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||    
T  2419622 gagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttataggt 2419692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 30634105 - 30634161
Alignment:
Q  159 accgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||    
T  30634105 accgtcccaaaaacgtttgtgcttcagtttttaccaccggccaacttgcgcaagtta 30634161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 3515201 - 3515264
Alignment:
Q  152 attgactaccgtccaagaaacatttgtgcttcagtttttaccaccggccaacttgcgcaagtta 215  Q
    |||||| ||||||| | |||| |||||||| |||||||||||||||||||||||||||||||||    
T  3515201 attgaccaccgtccgaaaaacgtttgtgctacagtttttaccaccggccaacttgcgcaagtta 3515264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4272 - 4205
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttata 68  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||    
T  4272 gagaaagagggggagagagtgggaggagataatgtgaggaaaagaggaagtttgtgagggtatttata 4205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25863 - 25793
Alignment:
Q  1 gagaaatagggggagagagtgggaggagaaaatgtgaggaaaagaggaagtatgtgaggatttttataggt 71  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||||| | ||||||| | |||||||||    
T  25863 gagaaagagggggagagagtgggaggagataatatgaggaaaagaggaaatttgtgagggtatttataggt 25793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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