View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_3 (Length: 435)
Name: NF12792_low_3
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 8330383 - 8330792
Alignment:
| Q |
6 |
agaagcagagacagggactaatgactctatgcatcagtggccaatgaaaaatgaccaaagtcactactaagtagacatccattttctttgtagattttca |
105 |
Q |
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| T |
8330383 |
agaaacagagacagggactaatgattctatgcatcagtgaccaatgaaaaatgaccaaagtcactactaagtagacatccattttctttgtagattttca |
8330482 |
T |
|
| Q |
106 |
ctataggccaatgacacccaaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactttgtacaaatatgttttgcc |
205 |
Q |
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| T |
8330483 |
ctataggccaatgacacccaaatgttataaatatataactggtacactattatcttgagattgaacgatataaaataactttgtacaaatatgttttgcc |
8330582 |
T |
|
| Q |
206 |
ttgcatttgatcaacttacacaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttctagttgtaacatcatgcaac |
305 |
Q |
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| T |
8330583 |
ttgcatttgatcaacttacacaagattattcaaagcacaacatataattaagtattaatactagaaaccagagtaacttctagttgt-acatcatgcaac |
8330681 |
T |
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| Q |
306 |
tcatacaaatcttatatacaagtcctgcctgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgtctaactttgtgaacagcat |
405 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8330682 |
tcatacaaatcttatatacaagtcctgcccgtgtcctgacactgagacaaccataaatccatatgctctatgatcttttgtctaactttgtgaacagcat |
8330781 |
T |
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| Q |
406 |
caggggatgtg |
416 |
Q |
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| T |
8330782 |
caggggatgtg |
8330792 |
T |
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