View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12792_low_5 (Length: 412)

Name: NF12792_low_5
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12792_low_5
NF12792_low_5
[»] chr2 (2 HSPs)
chr2 (1-308)||(18031190-18031493)
chr2 (358-398)||(18031100-18031140)
[»] chr4 (1 HSPs)
chr4 (133-296)||(55156474-55156642)
[»] chr3 (4 HSPs)
chr3 (134-308)||(29642020-29642198)
chr3 (214-264)||(4803977-4804027)
chr3 (217-264)||(10535703-10535750)
chr3 (97-131)||(48101527-48101561)
[»] chr7 (2 HSPs)
chr7 (233-302)||(22002453-22002522)
chr7 (73-113)||(22002229-22002269)
[»] chr8 (2 HSPs)
chr8 (208-304)||(32309433-32309529)
chr8 (1-128)||(32309140-32309266)
[»] chr6 (5 HSPs)
chr6 (208-304)||(33364663-33364759)
chr6 (96-131)||(22208490-22208525)
chr6 (1-128)||(33364370-33364496)
chr6 (89-131)||(16592721-16592763)
chr6 (79-129)||(33164133-33164183)
[»] chr1 (7 HSPs)
chr1 (208-304)||(30330131-30330227)
chr1 (217-264)||(25626139-25626186)
chr1 (1-128)||(30330394-30330520)
chr1 (97-131)||(9934245-9934279)
chr1 (79-129)||(24208117-24208167)
chr1 (79-129)||(45027897-45027947)
chr1 (79-129)||(45032745-45032795)
[»] scaffold0009 (1 HSPs)
scaffold0009 (217-264)||(89640-89687)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 18031493 - 18031190
Alignment:
Q  1 agactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataag 100  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  18031493 agactttaagttgagaataggagggacgtttttggtaaaaaaattgtatttggtgtttgaagagctaattgtt-----ggaagaataattaacaaataag 18031399  T
Q  101 tagccatatgaagagcatgatgccaaaatgatgtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttacattatgaaaagaa-tattgt 199  Q
    ||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| |||||||||||||||||| ||||||    
T  18031398 tagtcatatgaagagcatgatgtcaaaaagatgtgaggtgtggggacaagaaaattggaagctcattccattatatttacattatgaaaagaagtattgt 18031299  T
Q  200 catattgttttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgaga 299  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031298 catattcttttctgttatcacattgaaaacattttatatctcttttaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgaga 18031199  T
Q  300 tttatgtgc 308  Q
    |||||||||    
T  18031198 tttatgtgc 18031190  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 18031140 - 18031100
Alignment:
Q  358 gagtaacgatgaccaccaggaccaagagttgctgatgtcca 398  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  18031140 gagtaacgatgaccaccatgaccaagagttgttgatgtcca 18031100  T

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Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 133 - 296
Target Start/End: Complemental strand, 55156642 - 55156474
Alignment:
Q  133 gtgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaa-tattgtcatattgttttctgttatcacgttgaaa 227  Q
    |||||||||| | ||||||||||   |||||||||||||| ||||||||    ||||  |||||| |||||||||||| ||||| |||||||| ||||||    
T  55156642 gtgaggtgtgaggacaagaaaaccagaagctcattccattttgtttacagaaattatagaaagaagtattgtcatattcttttccgttatcacattgaaa 55156543  T
Q  228 acattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttg 296  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| ||||    
T  55156542 acattttatatctctttcaaattgtgttttaatgtgattgcgaaaatgaagaaaaatggaataaacttg 55156474  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 308
Target Start/End: Complemental strand, 29642198 - 29642020
Alignment:
Q  134 tgaggtgtgggtacaagaaaactgaaagctcattccattatgtttaca----ttatgaaaagaata-ttgtcatattgttttctgttatcacgttgaaaa 228  Q
    ||||||||| | |||||||||||| |||||| ||||||| ||||||||    ||||| |||||| | |||||||||| ||||| |||||||| |||||||    
T  29642198 tgaggtgtgaggacaagaaaactggaagctc-ttccattttgtttacaaagattatggaaagaagaattgtcatattattttccgttatcacattgaaaa 29642100  T
Q  229 cattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttatgtgc 308  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||| ||||||||||||| ||||||||||||| |||||    
T  29642099 cattgtatatctcttttaaattgtgttttaatgtgattgcgaaaataaagaaaagtggaaaaagcttgagatttgtgtgc 29642020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 4803977 - 4804027
Alignment:
Q  214 ttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 264  Q
    ||||||| ||||||||||||||| || | ||||||||||||||||||||||    
T  4803977 ttatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 4804027  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 10535703 - 10535750
Alignment:
Q  217 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 264  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  10535703 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 10535750  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 48101527 - 48101561
Alignment:
Q  97 taagtagccatatgaagagcatgatgccaaaatga 131  Q
    ||||||||||| |||||||||||||||||||||||    
T  48101527 taagtagccatttgaagagcatgatgccaaaatga 48101561  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 22002453 - 22002522
Alignment:
Q  233 ttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagattt 302  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||    
T  22002453 ttatatctctttcaaattttgttttaatttgattaggaaaatgaataaaagtggaataagcttgagattt 22002522  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 22002229 - 22002269
Alignment:
Q  73 ttggttggaagaataattaacaaataagtagccatatgaag 113  Q
    ||||||||||||||| ||||||||||||| | |||||||||    
T  22002229 ttggttggaagaatatttaacaaataagtggtcatatgaag 22002269  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 32309433 - 32309529
Alignment:
Q  208 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 304  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||| || |||||| |||| | |||||| |||||||    
T  32309433 tttccgttatcacattgaaaacatttaatatctctttcaaattgtgttttaatgtgattacaaaattggagaaaaatggagtgagcttgtgatttat 32309529  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 32309140 - 32309266
Alignment:
Q  1 agactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataag 100  Q
    |||||||||| ||||| | ||| ||| ||||||||| | | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | |||||    
T  32309140 agactttaagatgagagtaggatggagatttttggt-agagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataag 32309238  T
Q  101 tagccatatgaagagcatgatgccaaaa 128  Q
    ||||||| ||||| || |||||||||||    
T  32309239 tagccatttgaagtgcgtgatgccaaaa 32309266  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 33364663 - 33364759
Alignment:
Q  208 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 304  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  33364663 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 33364759  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 22208490 - 22208525
Alignment:
Q  96 ataagtagccatatgaagagcatgatgccaaaatga 131  Q
    |||||||||||| |||||||||||||||||||||||    
T  22208490 ataagtagccatttgaagagcatgatgccaaaatga 22208525  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 33364370 - 33364496
Alignment:
Q  1 agactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataag 100  Q
    |||||||||| ||||| | ||| ||| ||||||||| | | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | |||||    
T  33364370 agactttaagatgagagtaggatggagatttttggt-agagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataag 33364468  T
Q  101 tagccatatgaagagcatgatgccaaaa 128  Q
    ||||||| ||||| || |||||||||||    
T  33364469 tagccatttgaagtgcgtgatgccaaaa 33364496  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 16592763 - 16592721
Alignment:
Q  89 ttaacaaataagtagccatatgaagagcatgatgccaaaatga 131  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  16592763 ttaacatataagttgccatgtgaagagcatgatgccaaaatga 16592721  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 33164183 - 33164133
Alignment:
Q  79 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 129  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  33164183 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 33164133  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 30330227 - 30330131
Alignment:
Q  208 tttctgttatcacgttgaaaacattttatatctctttcaaattgtgttttaatgtgattaagaaaatgaagaaaagtggaataagcttgagatttat 304  Q
    |||| |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||| |||| | |||||| |||||||    
T  30330227 tttccgttatcacattgaaaacatttaatatctttttcaaattgtgttttaatgtgattacgaaattggagaaaaatggagtgagcttgtgatttat 30330131  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 25626139 - 25626186
Alignment:
Q  217 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 264  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  25626139 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 25626186  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 30330520 - 30330394
Alignment:
Q  1 agactttaagttgagaattggagggacatttttggttaaaaaattgtatttggtgtttgaagagctaattgtttggttggaagaataattaacaaataag 100  Q
    |||||||||| ||||| | ||| ||| ||||||||| | | ||||||  |||||||||||||||||| ||  ||||| || || ||  |||| | |||||    
T  30330520 agactttaagatgagagtaggatggagatttttggt-agagaattgtggttggtgtttgaagagctagtttcttggtgggtaggatgtttaagagataag 30330422  T
Q  101 tagccatatgaagagcatgatgccaaaa 128  Q
    ||||||| ||||| || |||||||||||    
T  30330421 tagccatttgaagtgcgtgatgccaaaa 30330394  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 9934245 - 9934279
Alignment:
Q  97 taagtagccatatgaagagcatgatgccaaaatga 131  Q
    ||||||||||| |||||||||||||||||||||||    
T  9934245 taagtagccatttgaagagcatgatgccaaaatga 9934279  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 24208167 - 24208117
Alignment:
Q  79 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 129  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  24208167 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 24208117  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 45027947 - 45027897
Alignment:
Q  79 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 129  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45027947 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45027897  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 45032795 - 45032745
Alignment:
Q  79 ggaagaataattaacaaataagtagccatatgaagagcatgatgccaaaat 129  Q
    ||||||||| ||| ||||||||| ||||| ||||| |||||||||||||||    
T  45032795 ggaagaatatttagcaaataagttgccatgtgaagtgcatgatgccaaaat 45032745  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 89687 - 89640
Alignment:
Q  217 tcacgttgaaaacattttatatctctttcaaattgtgttttaatgtga 264  Q
    |||| ||||||||||||||| || | ||||||||||||||||||||||    
T  89687 tcacattgaaaacattttatttcacgttcaaattgtgttttaatgtga 89640  T

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