View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12792_low_8 (Length: 379)
Name: NF12792_low_8
Description: NF12792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12792_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 372
Target Start/End: Original strand, 24567776 - 24568137
Alignment:
| Q |
11 |
acatcaacataacaaagaagagtagaaagaaatcaaaattggaaacaagtaaagtgaatgaggaatctattttttctctcagaatgcttactagtgnnnn |
110 |
Q |
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| T |
24567776 |
acatcaacataacaaagaagagtagaaagaaatcaaaattggaaacaagtaaagtgaatgaggaatctattttttctctcacaatgcttactagtgtttt |
24567875 |
T |
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| Q |
111 |
nnnggaaaatgtgataaatttaaagagagaataattaaatattatgtggcgaatggtagaagagagattaagccaccggccatatacagtcaacaaaatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567876 |
tttggaaaatgtgataaatttaaagagagaataattaaatattatgtggcgaatggtagaagagagattaagccaccggccatatacagtcaacaaaatt |
24567975 |
T |
|
| Q |
211 |
aaatctggttgtcacgccgtttcaggttctgagaccaaattcattgtcaggggaatgtgactgacacgtgtcagtttatattggttctctttgtcttctg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24567976 |
aaatctggttgtcacgccgtttcaggttctgagaccaaattcattgtcaggggaatgtgactgacacgtgtcagtttatattggttctctttgtcttctg |
24568075 |
T |
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| Q |
311 |
ctctttcactttcaaactttgcaaccaaacggaccaattgtcttatttgcatgtctctgcta |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24568076 |
ctctttcactttcaaactttgcaaccaaacggaccaattgtcttatttgcatgtctctgcta |
24568137 |
T |
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