View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12793_high_4 (Length: 334)
Name: NF12793_high_4
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 45389701 - 45390004
Alignment:
| Q |
16 |
cacatgctattccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45389701 |
cacatgctattccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaac |
45389800 |
T |
|
| Q |
116 |
aggggtcagtacagaacctggataaaaactgcaccagtgccatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaaga |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45389801 |
aggggtcagtacagaacctgaataaaaactgcaccagtgcaatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaaga |
45389900 |
T |
|
| Q |
216 |
ttgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45389901 |
ttgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcc |
45390000 |
T |
|
| Q |
316 |
tatg |
319 |
Q |
| |
|
|||| |
|
|
| T |
45390001 |
tatg |
45390004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 45374543 - 45374846
Alignment:
| Q |
16 |
cacatgctattccctatattgaatttttcaaattgcataagagaaagaaaagcgggtaacagtaaacaggcttacttgacatagttttgtcttgtgtaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45374543 |
cacatgctattccctatattgaatttttcaaattgcataagagaaagaaaagtgggcaacagtaaacgggcttacttgacatagttttgtcttgtgtaac |
45374642 |
T |
|
| Q |
116 |
aggggtcagtacagaacctggataaaaactgcaccagtgccatgtcttcttatccagacctggtatgtttccatgaactttcatcattagctcaggaaga |
215 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45374643 |
aggggtcagtacagaacttgaataaaaattgcaccagtgcgatgccttcttatccagacctagtatgtttccatgaactttcatcattagctcaggatga |
45374742 |
T |
|
| Q |
216 |
ttgtacaagattctgacatatttcatgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45374743 |
ttgtacaagattctgacatatttcgtgtttcatgcagtgcttctttccacaatatgtgttgaaatatatatcaacaccatattttatcttgaactctgcc |
45374842 |
T |
|
| Q |
316 |
tatg |
319 |
Q |
| |
|
|||| |
|
|
| T |
45374843 |
tatg |
45374846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University