View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12793_high_8 (Length: 245)
Name: NF12793_high_8
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 22077364 - 22077144
Alignment:
| Q |
7 |
tggagtagcataggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtc |
106 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22077364 |
tggagtaccttaggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtc |
22077265 |
T |
|
| Q |
107 |
aaagaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattata |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22077264 |
aaagaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattata |
22077165 |
T |
|
| Q |
207 |
ttggtggaagaaactgatttc |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22077164 |
ttggtggaagaaactgatttc |
22077144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 31210892 - 31210854
Alignment:
| Q |
47 |
actctaggaattgattgatgagcttggaaaatatttgta |
85 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
31210892 |
actctaggaattgattgataaacttggaaaatatttgta |
31210854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 69007 - 68788
Alignment:
| Q |
7 |
tggagtagcataggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtc |
106 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
69007 |
tggagtaccttaggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttg-aaaatatttgtatacaaaatgatttgtgtagtc |
68909 |
T |
|
| Q |
107 |
aaagaataggaagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattata |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
68908 |
aaagaataggaagtaataagagaatattgcgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattata |
68809 |
T |
|
| Q |
207 |
ttggtggaagaaactgatttc |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
68808 |
ttggtggaagaaactgatttc |
68788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 40458636 - 40458553
Alignment:
| Q |
7 |
tggagtagcataggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
90 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458636 |
tggagtaccttaggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
40458553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 40447132 - 40446922
Alignment:
| Q |
17 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40447132 |
taggacatacacgaattttgtgaggaataaactctaggagttgattgatgagcttggaaaaaatttgtatacaaaatgatttgtgtagtcaaagaatagg |
40447033 |
T |
|
| Q |
117 |
aagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggtggaag |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40447032 |
aagtaataagagaatactgtgagagggaacaatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggtggaag |
40446933 |
T |
|
| Q |
217 |
aaactgatttc |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
40446932 |
aaactgatttc |
40446922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 337759 - 337549
Alignment:
| Q |
17 |
taggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
337759 |
taggacatacacgaattttgtgaggaataaactctaggagttgattgatgagcttggaaaatatttgtatacaaaatgatttgtgtagtcaaagaatagg |
337660 |
T |
|
| Q |
117 |
aagtaataagagaatattgtgagagggaacaatttgcgtatggtcatttggagggggatggagtttgccttctaggtttggctaattatattggtggaag |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
337659 |
aagtaataagagaatactgtgagagggaataatttgcgtatgatcctttggagggggatggagtttgccttctaggtttggctaattatattggtggaag |
337560 |
T |
|
| Q |
217 |
aaactgatttc |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
337559 |
aaactgatttc |
337549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 43408276 - 43408359
Alignment:
| Q |
7 |
tggagtagcataggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
90 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43408276 |
tggagtaccttaggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatatttgtatacaa |
43408359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 37667667 - 37667742
Alignment:
| Q |
7 |
tggagtagcataggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatattt |
82 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37667667 |
tggagtaccttaggacatacacgaattttgtgaggaataaactctaggaattgattgatgagcttggaaaatattt |
37667742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University