View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12793_low_1 (Length: 637)
Name: NF12793_low_1
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 19 - 625
Target Start/End: Complemental strand, 983663 - 983057
Alignment:
| Q |
19 |
cataagacagtcgcacgacaaatctttagttacttcaaacattattttgggggttatgttctctaagttacaacttcacaaactcatgcaaacattcaaa |
118 |
Q |
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| T |
983663 |
cataagacagtcgcacgacaaatctttagttacttcaaacattattttgggggttatgttctctaagttacaacttcacaaactcatgcaaacattcaaa |
983564 |
T |
|
| Q |
119 |
taataatattattataacagatccaatctatcgcagcgaaaattaagctccaaactcggacattgattccctgtggtcggggaatcttgcattcacgcag |
218 |
Q |
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| T |
983563 |
taataatattattataacagatccaatctatcgcagcgaaaattaagctccaaactcggacattgattccctgtggtcggggaatcttgcattcacgcag |
983464 |
T |
|
| Q |
219 |
ccaggtcaataacagccattgcatgaaaaccagacagcacatatttaaagcttaataaacatgcatttaaaacataacttgaaatacaagtcgcacgatt |
318 |
Q |
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| T |
983463 |
ccaggtcaataacagccattgcatgaaaaccagacagctcatatttaaagcttaataaacatgcttttaaaacataacttgaaatacaagtcgcacgatt |
983364 |
T |
|
| Q |
319 |
ttcaattaatggccgagatttttgactacgtcaattcatgaccgcgtgaaatctatttcctcatagtcacaagatgagtaaaccaattaattcttaagta |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
983363 |
ttcaattaatggccgagatttttgactatgtcaattcatgaccgcgtgaaatctatttcctcatagtcacaagatgagtaaaccaattaattcttaagta |
983264 |
T |
|
| Q |
419 |
aagaacacgtaacatttcagtatttgaaaacattgaatcacatattctatttaaaacgnnnnnnntatataattcatataaatagtacaaagaaatacct |
518 |
Q |
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| T |
983263 |
aagaacacgtaacatttcagtatttgaaaacattgaatcacatattctatttaaaacgaaaaaaatatataattcatataaatagtacaaagaaatacct |
983164 |
T |
|
| Q |
519 |
gcaacatcttgagtatcatatgtgcctctatagacagtaccataagcaccatgagcaacaacataccttaaatccaatttggccaactcaacctcccatt |
618 |
Q |
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| T |
983163 |
gcaacatcttgagtatcatatgtgcctctatagacagtaccataagcaccatgagcaacaacataccttaaatccaatttggccaactcaacctcccatt |
983064 |
T |
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| Q |
619 |
cttctct |
625 |
Q |
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| T |
983063 |
cttctct |
983057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 623
Target Start/End: Complemental strand, 46734255 - 46734151
Alignment:
| Q |
519 |
gcaacatcttgagtatcatatgtgcctctatagacagtaccataagcaccatgagcaacaacataccttaaatccaatttggccaactcaacctcccatt |
618 |
Q |
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||||||||||| | ||||| || || || |||||||| |||||||| |||| ||||||||||| | || |||||||| ||||| |||| |||||| | |
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| T |
46734255 |
gcaacatcttggttgtcataagttcccctgtagacagtgccataagccccatttgcaacaacatatcgtatttccaatttagccaaatcaatctcccact |
46734156 |
T |
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| Q |
619 |
cttct |
623 |
Q |
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||||| |
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| T |
46734155 |
cttct |
46734151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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