View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12793_low_2 (Length: 484)
Name: NF12793_low_2
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_low_2 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 43973582 - 43974065
Alignment:
| Q |
1 |
gtttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973582 |
gtttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtt |
43973681 |
T |
|
| Q |
101 |
tctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973682 |
tctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttg |
43973781 |
T |
|
| Q |
201 |
gtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtc |
300 |
Q |
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| T |
43973782 |
gtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtc |
43973881 |
T |
|
| Q |
301 |
attcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973882 |
attcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcat |
43973981 |
T |
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| Q |
401 |
cgagtttcgatgcgattgctcatgttcgtgtgagtgaaaatccttatactttaatgaatgaagcttatagggctattagggttc |
484 |
Q |
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| T |
43973982 |
cgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttc |
43974065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 5 - 317
Target Start/End: Original strand, 8952145 - 8952456
Alignment:
| Q |
5 |
cttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtttctt |
104 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
8952145 |
cttttagttctgtctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacatgttcatgctttttctcgcaaaggtggtttctt |
8952244 |
T |
|
| Q |
105 |
tggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttggtgg |
204 |
Q |
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| T |
8952245 |
tggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttaatggaaaa-actttgttagtgtttttaggctcaaaacttggtgg |
8952343 |
T |
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| Q |
205 |
tctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattc |
304 |
Q |
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| T |
8952344 |
tctagtcaatggataggaaattctggatctgatttacaaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattc |
8952443 |
T |
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| Q |
305 |
ctgtcattgaaaa |
317 |
Q |
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|| ||| |||||| |
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| T |
8952444 |
ctatcaatgaaaa |
8952456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 8952458 - 8952513
Alignment:
| Q |
353 |
accatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttc |
408 |
Q |
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| T |
8952458 |
accatgtcatgatttgtgctgaaagtagttcaacacaagtaaaagcattgagtttc |
8952513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 43565020 - 43564537
Alignment:
| Q |
1 |
gtttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtt |
100 |
Q |
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|||||||| |||||||||||| ||||||||| |||||||||||||||| ||||||||| | ||||| |||| || |||||||||||||||||||| |
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| T |
43565020 |
gtttctttcggttctttctctgaaatatgcaaaccctctgaatcaaatgctccaccttcaatccttcaaaaagttcttgatttttctcacaaaggtggtt |
43564921 |
T |
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| Q |
101 |
tctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttg |
200 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| ||| |||| ||||||||||| || |
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| T |
43564920 |
tctttggattctctcatgaaaccccgtctgatagattgatgaattcattaggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaacgtg |
43564821 |
T |
|
| Q |
201 |
gtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtc |
300 |
Q |
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|||||| | ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564820 |
gtggtccactcaatgggtaggaaaatctggttctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtc |
43564721 |
T |
|
| Q |
301 |
attcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcat |
400 |
Q |
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|||||| | ||||||||| |||||||||| || ||| |||||||||| |||||||||| |||||||||||||||||||| ||||| | ||| || || |
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| T |
43564720 |
attcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgtgctgaaagtggttcaaccaaggtggtagaat |
43564621 |
T |
|
| Q |
401 |
cgagtttcgatgcgattgctcatgttcgtgtgagtgaaaatccttatactttaatgaatgaagcttatagggctattagggttc |
484 |
Q |
| |
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| |||||| |||| |||||| |||||| | | ||||||||||||| ||| ||||| ||||||||||| | ||| ||||||| |
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| T |
43564620 |
ctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttc |
43564537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 36432975 - 36432492
Alignment:
| Q |
1 |
gtttcttttagttctttctctgctatatgcaaaacctctgaatcaaatgcaccaccttcacttgttcaacgtgttcatgctttttctcacaaaggtggtt |
100 |
Q |
| |
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|||||||| ||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||| ||| | ||||||| | ||||||||||||||||||||| |
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| T |
36432975 |
gtttctttcagttcattctcttctatatgtaaaccctctgagtcaaatgcaccaccttcactcgttgaccgtgttctttctttttctcacaaaggtggtt |
36432876 |
T |
|
| Q |
101 |
tctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaacttg |
200 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||| ||||| || ||||||||||| |||| | | ||||||||||| ||||||||||||||||||| |
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| T |
36432875 |
tctttggattctccaatgaaaccccatctgatagattcatgaattcattaggtagtttcaatggtagaaactttgtcagtatttttaggttcaaaacttg |
36432776 |
T |
|
| Q |
201 |
gtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtc |
300 |
Q |
| |
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|||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| || |
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| T |
36432775 |
gtggtctactcaatggataggaagatctggttctgatttgcaaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgctgtgatc |
36432676 |
T |
|
| Q |
301 |
attcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcat |
400 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |||||| | |||||||||| |
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| T |
36432675 |
attcctatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgatttgtgctgagagtggttcaacaaaggtgaaagcat |
36432576 |
T |
|
| Q |
401 |
cgagtttcgatgcgattgctcatgttcgtgtgagtgaaaatccttatactttaatgaatgaagcttatagggctattagggttc |
484 |
Q |
| |
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||||||| |||| |||||| |||||| | | ||||||||||||| ||| ||||| ||||||||||| ||| | ||||||| |
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| T |
36432575 |
tgagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgctttgagggttc |
36432492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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