View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12793_low_3 (Length: 387)

Name: NF12793_low_3
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12793_low_3
NF12793_low_3
[»] chr3 (10 HSPs)
chr3 (17-387)||(20995061-20995429)
chr3 (116-387)||(20981902-20982176)
chr3 (191-381)||(20948577-20948764)
chr3 (291-387)||(45870482-45870578)
chr3 (291-359)||(2996504-2996572)
chr3 (297-355)||(476037-476095)
chr3 (294-348)||(8400529-8400583)
chr3 (326-387)||(21537064-21537125)
chr3 (301-345)||(5362415-5362459)
chr3 (299-351)||(7177950-7178002)
[»] chr4 (2 HSPs)
chr4 (247-387)||(3978048-3978188)
chr4 (275-376)||(36643650-36643751)
[»] chr7 (3 HSPs)
chr7 (257-345)||(6889104-6889192)
chr7 (261-351)||(14677133-14677223)
chr7 (294-387)||(44501441-44501534)
[»] chr8 (1 HSPs)
chr8 (47-102)||(32884610-32884665)
[»] chr5 (3 HSPs)
chr5 (255-322)||(38142201-38142268)
chr5 (261-351)||(17667126-17667216)
chr5 (272-328)||(7976853-7976909)
[»] chr6 (4 HSPs)
chr6 (299-351)||(7115572-7115624)
chr6 (299-351)||(7120644-7120696)
chr6 (299-351)||(7124048-7124100)
chr6 (299-351)||(8656677-8656729)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 20995429 - 20995061
Alignment:
Q  17 caggtccacactaggcgtgagagtggatgctgaagttggttttaaaaatgttcgtcatttgttatttgtcctacattgcttaggtttcaggactgttgag 116  Q
    |||| |||||||| |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20995429 caggcccacactaagcgtgagagtgggtgttgaagttggttttaaaaatgttcgtcgtttgttatttgtcctacattgcttaggtttcaggactgttgag 20995330  T
Q  117 ctaacttttggcatgaaatccaagcacatttaacggtttcaacctttttctactaggtatatatccaaatgtcaaattcagaggatgagataatgattcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  20995329 ctaacttttggcatgaaatccaagcacatttaacggtttcaacctttttctactaggtatat--ccaaatgtctaattcagaggatgagatcatgattcc 20995232  T
Q  217 gccgcagccgacaaagaaagttaagctcagcagcgagtgtgaagatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctccttt 316  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995231 gccgccgccgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctccttt 20995132  T
Q  317 ctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20995131 ctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 20995061  T

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Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 116 - 387
Target Start/End: Complemental strand, 20982176 - 20981902
Alignment:
Q  116 gctaacttttggcatgaaatccaagcacatttaacggtttcaacctttttc---tactaggtatatatccaaatgtcaaattcagaggatgagataatga 212  Q
    |||| ||||||| |||| ||| ||||||||||||| |||||||||||||     ||||||||||||||||||||||| ||||||| ||||||||||| ||    
T  20982176 gctagcttttgggatgagatcgaagcacatttaacagtttcaaccttttatgattactaggtatatatccaaatgtctaattcagcggatgagataacga 20982077  T
Q  213 ttccgccgcagccgacaaagaaagttaagctcagcagcgagtgtgaagatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctc 312  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20982076 ttccgccgcagctgacgaagaaagttaagctcagcagcgagtgtgaaaatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctc 20981977  T
Q  313 ctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20981976 ctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcc 20981902  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 191 - 381
Target Start/End: Original strand, 20948577 - 20948764
Alignment:
Q  191 aattcagaggatgagataatgattccgccgcagccgacaaagaaagttaagctcagcagcgagtgtgaagatgaagatagactcagtgacttgcccgaaa 290  Q
    |||||||| || ||||||| |||||| ||||  ||||| |||||| |||||||||||   || || ||| | ||||||||||  ||||| || |||||||    
T  20948577 aattcagatgacgagataacgattccaccgccaccgacgaagaaaattaagctcagc---gattgcgaaaacgaagatagaccgagtgatttacccgaaa 20948673  T
Q  291 gtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacg 381  Q
    | ||||||||| |||||||||||||| | ||| || || | || ||||||||||||||||||||| ||| |||||| ||||| ||||||||    
T  20948674 gcgttatcctttacattctctcctttttaaacgcccaacacgccgttcaaacttgtgttttatccacaagatataacgatctctggaaacg 20948764  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 387
Target Start/End: Complemental strand, 45870578 - 45870482
Alignment:
Q  291 gtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    |||||||||||||||| || || |||  |||  ||||||| || ||||||||||| |||||||| |||| ||||| |||||||||||||||||||||    
T  45870578 gtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttggaaacgtcttcc 45870482  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 359
Target Start/End: Complemental strand, 2996572 - 2996504
Alignment:
Q  291 gtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaa 359  Q
    |||||||||||||||| || || ||| ||||||| ||||| || |||||||||||  ||||||||||||    
T  2996572 gtgttatccttcacatactttcatttttgaacacaaaagatgcagttcaaacttgcattttatccccaa 2996504  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 476037 - 476095
Alignment:
Q  297 tccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatcc 355  Q
    |||||||||  ||||||||| | ||| |||||||||| |||||||||||| ||||||||    
T  476037 tccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatcc 476095  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 8400583 - 8400529
Alignment:
Q  294 ttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgt 348  Q
    |||||| |||||||||||||||  |||| |||||||||| | |||||||||||||    
T  8400583 ttatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgt 8400529  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 21537064 - 21537125
Alignment:
Q  326 aaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    ||||||||||||||||||||| | ||||||  || ||  |||||||||||||||| ||||||    
T  21537064 aaagaagctgttcaaacttgtatcttatccaaaagatggaaggatctttggaaacatcttcc 21537125  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 5362415 - 5362459
Alignment:
Q  301 tcacattctctcctttctgaacaccaaagaagctgttcaaacttg 345  Q
    |||||||||||||||  || |||||||||||||| ||||||||||    
T  5362415 tcacattctctccttattggacaccaaagaagcttttcaaacttg 5362459  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 7177950 - 7178002
Alignment:
Q  299 cttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||| | ||||||| ||||||||||| | ||| ||||||||||||||||    
T  7177950 cttcacatacactcctttttgaacaccaaatacgcttttcaaacttgtgtttt 7178002  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 387
Target Start/End: Original strand, 3978048 - 3978188
Alignment:
Q  247 cagcgagtgtgaagatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgt 346  Q
    ||||||| | ||| ||||||| |||||||| ||||| || |||||  |||| |||||||| ||||| ||| | ||||||||  | || |||||||||||     
T  3978048 cagcgagagcgaaaatgaagacagactcagcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgc 3978147  T
Q  347 gttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  3978148 gttttatccacaagatataaggatctttggaaacgtcttcc 3978188  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 36643751 - 36643650
Alignment:
Q  275 agtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatcttt 374  Q
    |||||||| |||||  ||||||||||||||||| | || ||| || || ||||| | ||||||||||| |||||||| ||| ||| ||  ||| ||||||    
T  36643751 agtgacttacccgagtgtgttatccttcacattttatcatttttggactccaaacatgctgttcaaacctgtgttttgtccacaagatggaagcatcttt 36643652  T
Q  375 gg 376  Q
    ||    
T  36643651 gg 36643650  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 6889104 - 6889192
Alignment:
Q  257 gaagatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttg 345  Q
    |||||||||||| | ||||||||||| |||||  ||||||| |||||||| ||||| ||| || |||||| ||| ||||||||||||||    
T  6889104 gaagatgaagatcgcctcagtgacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttg 6889192  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 351
Target Start/End: Original strand, 14677133 - 14677223
Alignment:
Q  261 atgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||||| || || ||||| ||| | |||||||||||||| ||| | || ||| | ||||||||||||| ||||| |||||| |||||    
T  14677133 atgaagataggctaagcgacttacccaacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgtttt 14677223  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 44501534 - 44501441
Alignment:
Q  294 ttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcc 387  Q
    ||||||||||||| || || ||| ||||  ||||| | |||||||| |||||  |||| ||||| | ||  |||||||||||||||||||||||    
T  44501534 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 44501441  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 32884665 - 32884610
Alignment:
Q  47 tgaagttggttttaaaaatgttcgtcatttgttatttgtcctacattgcttaggtt 102  Q
    ||||||||||||| |||||||||||  |||||||||||||  |||||||| |||||    
T  32884665 tgaagttggttttgaaaatgttcgtagtttgttatttgtctcacattgctcaggtt 32884610  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 38142268 - 38142201
Alignment:
Q  255 gtgaagatgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaac 322  Q
    ||||| ||||||| |||||||| ||||| || ||  |||||||||||||||| ||||||||| |||||    
T  38142268 gtgaaaatgaagacagactcagcgacttacctgactgtgttatccttcacatactctcctttttgaac 38142201  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 17667216 - 17667126
Alignment:
Q  261 atgaagatagactcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||||| || ||  |||| ||||| |||||||||||||| ||| | || ||| | ||||||||||||| ||||| |||||| |||||    
T  17667216 atgaagataggctaagcaacttacccgacagtgttatccttcatattttgtcatttttaaacaccaaagaagttgttcgaacttgcgtttt 17667126  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 7976909 - 7976853
Alignment:
Q  272 ctcagtgacttgcccgaaagtgttatccttcacattctctcctttctgaacaccaaa 328  Q
    ||||| ||||| |||||| |  ||||||||||||||||||||||| ||||| |||||    
T  7976909 ctcagcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaa 7976853  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 7115624 - 7115572
Alignment:
Q  299 cttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||| ||||| ||| ||||||||||| | || |||||||||||||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 7115572  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 7120696 - 7120644
Alignment:
Q  299 cttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||| ||||| ||| ||||||||||| | || |||||||||||||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 7120644  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 7124100 - 7124048
Alignment:
Q  299 cttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||| ||||| ||| ||||||||||| | || |||||||||||||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 7124048  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 8656729 - 8656677
Alignment:
Q  299 cttcacattctctcctttctgaacaccaaagaagctgttcaaacttgtgtttt 351  Q
    |||||||| ||||| ||| ||||||||||| | || |||||||||||||||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgtttt 8656677  T

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