View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12793_low_4 (Length: 353)
Name: NF12793_low_4
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 25106881 - 25106592
Alignment:
| Q |
17 |
aactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatggataaatcaatcatatattcctatagcatgtataa |
116 |
Q |
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| T |
25106881 |
aactataaaactttagaaactgagtacataaatacaatttgacatttacaagtaataatgtcatcgataaatcaatcatatattcctatagcatgtataa |
25106782 |
T |
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| Q |
117 |
ttgtatatcatataaaaaactaaaggcgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtaccaccacaatctag |
216 |
Q |
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| T |
25106781 |
ttgtatatcatataaaaaactaaaggtgtaacaattcaaccatataaaggaataatccttatgcagattaaaacactcatcatgtaccaccacaatctag |
25106682 |
T |
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| Q |
217 |
taacaaatcaagatattgactgtaattaactttcatttctttctttgattccataatatgtttcttagatccctttagatagacaacgta |
306 |
Q |
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| T |
25106681 |
taacagatcaagatattgactgtaattaactttcattgctttctttgattccataatatgtttcttagatccctttagatagacaacgta |
25106592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 337
Target Start/End: Complemental strand, 25106487 - 25106457
Alignment:
| Q |
307 |
tccactgatcagtttcaaattggtaccacag |
337 |
Q |
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| T |
25106487 |
tccactgatcagtttcaaattggtaccacag |
25106457 |
T |
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