View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12793_low_7 (Length: 301)

Name: NF12793_low_7
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12793_low_7
NF12793_low_7
[»] chr5 (6 HSPs)
chr5 (17-290)||(41218836-41219109)
chr5 (129-219)||(26466799-26466889)
chr5 (138-224)||(20324040-20324126)
chr5 (154-224)||(26472137-26472207)
chr5 (154-208)||(42139695-42139749)
chr5 (154-219)||(9846974-9847039)
[»] chr6 (7 HSPs)
chr6 (17-290)||(21320696-21320968)
chr6 (138-224)||(14815012-14815098)
chr6 (154-208)||(28519707-28519761)
chr6 (129-182)||(21045827-21045880)
chr6 (129-182)||(21069142-21069195)
chr6 (129-182)||(21093519-21093572)
chr6 (135-219)||(5919733-5919817)
[»] chr4 (9 HSPs)
chr4 (135-230)||(22643558-22643653)
chr4 (138-224)||(5239554-5239640)
chr4 (138-224)||(10652951-10653037)
chr4 (138-224)||(10867096-10867182)
chr4 (155-224)||(18254024-18254093)
chr4 (129-225)||(51764210-51764306)
chr4 (135-219)||(23167439-23167523)
chr4 (135-182)||(35087409-35087456)
chr4 (135-181)||(22176971-22177017)
[»] chr7 (3 HSPs)
chr7 (154-205)||(27776938-27776989)
chr7 (144-225)||(19741083-19741164)
chr7 (154-208)||(18481653-18481707)
[»] chr2 (4 HSPs)
chr2 (129-225)||(19481605-19481701)
chr2 (129-225)||(11337740-11337836)
chr2 (155-224)||(20042874-20042943)
chr2 (156-224)||(13130806-13130874)
[»] chr1 (6 HSPs)
chr1 (138-224)||(2359771-2359857)
chr1 (155-224)||(49641066-49641135)
chr1 (156-224)||(6530897-6530965)
chr1 (155-217)||(9797125-9797187)
chr1 (135-181)||(52777885-52777931)
chr1 (119-224)||(17883718-17883823)
[»] scaffold0164 (1 HSPs)
scaffold0164 (155-224)||(27139-27208)
[»] chr8 (3 HSPs)
chr8 (155-224)||(15193146-15193215)
chr8 (154-223)||(19991272-19991341)
chr8 (154-208)||(21029626-21029680)
[»] chr3 (8 HSPs)
chr3 (155-224)||(53978164-53978233)
chr3 (154-224)||(8836234-8836304)
chr3 (158-214)||(17479390-17479446)
chr3 (132-208)||(35519235-35519311)
chr3 (154-224)||(55310169-55310239)
chr3 (135-208)||(7420057-7420130)
chr3 (119-224)||(38823501-38823606)
chr3 (141-181)||(19586740-19586780)
[»] scaffold0024 (1 HSPs)
scaffold0024 (154-227)||(12748-12821)
[»] scaffold0329 (1 HSPs)
scaffold0329 (135-181)||(11214-11260)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 41219109 - 41218836
Alignment:
Q  17 aaaacacttgaagcacttcatttcttatgttgaaaatcaatttcatgccactttaaaatgtcttagatctaataatggtagtgagtttattgctatgaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  41219109 aaaacacttgaagcacttcatttcttatgttgaaaatcaatttcataccactttaaaatgtcttagatctgataatggtagtgagtttattgctatgaca 41219010  T
Q  117 tcttttctcttatccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatg 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41219009 tcttttctcttatccaaaggtattattcatcataaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatg 41218910  T
Q  217 ttgctagatccttggcttttcactctcatgttcccattactatgtggaattttactgcgcaacatgctgttcat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41218909 ttgctagatccttggcttttcactctcatgttcccattactatgtggaattttactgtgcaacatgctgttcat 41218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 26466889 - 26466799
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttg 219  Q
    |||||||||||  ||||||| ||  |||||||||| || |||||||||||||||  ||||||||| || ||||| ||||||||||||||||    
T  26466889 tccaaaggtatagttcatcataagtcttgtgttgagactccccaacaaaatgggagggttgaaagaaaacatcagcacattttaaatgttg 26466799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 20324126 - 20324040
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||| ||| ||||||||||||| || |||||||||||    ||||| ||||| |||||||| ||||| ||||||| ||||    
T  20324126 attattcatcaaaaatcttgtgttgaaactcctcaacaaaatggtagagttgagaggaaacatcaacatattttgaatgttggtaga 20324040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 26472137 - 26472207
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||||| ||||||||||||||    |||||||| ||||||||||| ||| | ||||||||||||    
T  26472137 cttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgttgctaga 26472207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 42139695 - 42139749
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    ||||||||||||||||||||||||||||    || ||||| ||||||||||||||    
T  42139695 cttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 42139749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 9847039 - 9846974
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttg 219  Q
    ||||||||||||||||  ||||||||||   ||| || || ||||| |||||||||||||||||||    
T  9847039 cttgtgttgaaacccctgaacaaaatggtagggtagagagaaagcaccaacacattttaaatgttg 9846974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 21320696 - 21320968
Alignment:
Q  17 aaaacacttgaagcacttcatttcttatgttgaaaatcaatttcatgccactttaaaatgtcttagatctaataatggtagtgagtttattgctatgaca 116  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||| |||||    
T  21320696 aaaacacttgaagcaattcatttcttattttgaaaatcaatttcataccactttaaagtgtctttgatctgataatggtagtgagtttattgctttgaca 21320795  T
Q  117 tcttttctcttatccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacatttt-aaat 215  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||||||| ||||    
T  21320796 tcttttctcttatccaaaggtattcttcatcacaaaacttgtgttgaaa--ccccaacaaaatggggtggttgaaagaaagcatctacacattttaaaat 21320893  T
Q  216 gttgctagatccttggcttttcactctcatgttcccattactatgtggaattttactgcgcaacatgctgttcat 290  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  21320894 gttgctagatccttgacttttcactctcatgttcccattactatgtggaattttactgtgcaacatgttgttcat 21320968  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 14815012 - 14815098
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||    |||||||| || |||||||||||||||||||||| ||||    
T  14815012 attattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtaga 14815098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 28519761 - 28519707
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    |||||||||||||||||||||||||||||   || ||||| ||||||||||||||    
T  28519761 cttgtgttgaaaccccccaacaaaatgggagagtggaaagaaagcatcaacacat 28519707  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 21045827 - 21045880
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggg 182  Q
    |||||||||||| | ||||||||  ||||||||||||| |||||||||||||||    
T  21045827 tccaaaggtattttacatcagaagtcttgtgttgaaactccccaacaaaatggg 21045880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 21069142 - 21069195
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggg 182  Q
    |||||||||||| | ||||||||  ||||||||||||| |||||||||||||||    
T  21069142 tccaaaggtattttacatcagaagtcttgtgttgaaactccccaacaaaatggg 21069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 21093519 - 21093572
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggg 182  Q
    |||||||||||| | |||| |||  ||||||||||||| |||||||||||||||    
T  21093519 tccaaaggtattttacatcggaagtcttgtgttgaaactccccaacaaaatggg 21093572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 5919817 - 5919733
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttg 219  Q
    |||||||||||| | ||| | ||||||||||| || |||||||||||    ||||| ||||| ||| |||| |||||||||||||    
T  5919817 ggtattattcataaaaaatcatgtgttgaaactcctcaacaaaatggtagagttgagaggaaacattaacatattttaaatgttg 5919733  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 22643558 - 22643653
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagatccttg 230  Q
    |||||||||||||| ||| | ||||||||||| |||||||||||||||  ||||||||| ||||||||||| ||||| ||||||| |||| |||||    
T  22643558 ggtattattcatcacaaatcatgtgttgaaactccccaacaaaatgggagggttgaaagaaagcatcaacatattttgaatgttgttagagccttg 22643653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 5239554 - 5239640
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||    |||||||| || |||||||||||||||||||||| ||||    
T  5239554 attattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtaga 5239640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 10652951 - 10653037
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||    |||||||| || |||||||||||||||||||||| ||||    
T  10652951 attattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtaga 10653037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 10867096 - 10867182
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||    |||||||| || |||||||||||||||||||||| ||||    
T  10867096 attattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtaga 10867182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 18254024 - 18254093
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  18254024 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctaga 18254093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 51764210 - 51764306
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagat 225  Q
    |||||||| || || ||||| || ||||||||||| || || |||||||||||||| |||||||| ||| ||||||||||| | ||||| |||||||    
T  51764210 tccaaaggaatcatccatcaaaagacttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagaatcaacacattctcaatgtggctagat 51764306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 23167523 - 23167439
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttg 219  Q
    |||||||||||||| ||  |||||||||| || |||||||||||||||   |||||||| ||||| ||||||||| | |||||||    
T  23167523 ggtattattcatcaaaagtcttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacattctcaatgttg 23167439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 35087409 - 35087456
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggg 182  Q
    |||||| ||||||||||| ||||||||||||| ||||| |||||||||    
T  35087409 ggtattgttcatcagaaatcttgtgttgaaactccccagcaaaatggg 35087456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Complemental strand, 22177017 - 22176971
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatgg 181  Q
    ||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  22177017 ggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatgg 22176971  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 27776938 - 27776989
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaaca 205  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27776938 cttgtgttgaaacaccccaacaaaatggggtggttgaaaggaagcatcaaca 27776989  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 19741083 - 19741164
Alignment:
Q  144 catcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagat 225  Q
    ||||| || ||||||||||| || || |||||||||||||| |||||||| ||||||||||||||| | ||||| |||||||    
T  19741083 catcaaaagacttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattcttaatgtggctagat 19741164  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 18481707 - 18481653
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    ||||||||||||||||||||||||||||    || ||||| ||||||||||||||    
T  18481707 cttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 18481653  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 19481605 - 19481701
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagat 225  Q
    |||||||| || || ||||| || ||||||||||| || || |||||||||||||| |||||||| ||||||||||||||| | ||||| |||||||    
T  19481605 tccaaaggaatcatccatcaaaagacttgtgttgagacgcctcaacaaaatggggttgttgaaagaaagcatcaacacattctcaatgtggctagat 19481701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 11337740 - 11337836
Alignment:
Q  129 tccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagat 225  Q
    |||||||| || || ||||| || ||||||||||| || || |||||||||||||  |||||||| ||||||||||||||| | ||||| |||||||    
T  11337740 tccaaaggaatcatccatcaaaagacttgtgttgagacgcctcaacaaaatggggctgttgaaagaaagcatcaacacattctcaatgtggctagat 11337836  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 20042943 - 20042874
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||||||||||||||||||||  ||| ||||| || ||||| || ||||| ||||||||||||    
T  20042943 ttgtgttgaaaccccccaacaaaatgggagggtggaaagaaaacatcagcatattttgaatgttgctaga 20042874  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 13130806 - 13130874
Alignment:
Q  156 tgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||| ||||||||||||||    |||||||| ||||||||||| ||  | ||||||||||||    
T  13130806 tgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatatccttaatgttgctaga 13130874  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 2359771 - 2359857
Alignment:
Q  138 attattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||    |||||||| || |||||||||||||||||||||| ||||    
T  2359771 attattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtaga 2359857  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 49641135 - 49641066
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  49641135 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctaga 49641066  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 6530897 - 6530965
Alignment:
Q  156 tgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||| ||||||||||||||   |||| |||| || |||||||| || |||||||||||||||    
T  6530897 tgtgttgaaactccccaacaaaatggtagggttaaaagaaaacatcaacatatattaaatgttgctaga 6530965  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 9797187 - 9797125
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgt 217  Q
    ||||||||||||||||||||||||||||  ||| ||||| ||||  ||||| ||| |||||||    
T  9797187 ttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgt 9797125  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 52777885 - 52777931
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatgg 181  Q
    ||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  52777885 ggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatgg 52777931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 17883823 - 17883718
Alignment:
Q  119 ttttctcttatccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgtt 218  Q
    |||||| ||||||||||| ||| |||| || |   ||||||| |||||||| || ||||||||    |||||| | || |||||||| ||||||||||||    
T  17883823 ttttcttttatccaaaggaattcttcaccaaaggtcttgtgtggaaaccccgcagcaaaatggtactgttgaacgaaaacatcaacatattttaaatgtt 17883724  T
Q  219 gctaga 224  Q
    ||||||    
T  17883723 gctaga 17883718  T

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Target: scaffold0164 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 27208 - 27139
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  27208 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctaga 27139  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 15193146 - 15193215
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  15193146 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctaga 15193215  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 19991272 - 19991341
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctag 223  Q
    |||||||||| || ||  ||||||||||  | |||||||||||||||||||| || ||||||||||||||    
T  19991272 cttgtgttgagactcctgaacaaaatggtatagttgaaaggaagcatcaacatatcttaaatgttgctag 19991341  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 21029680 - 21029626
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    ||||||||||||||||||||||||||||    || ||||| ||||||||||||||    
T  21029680 cttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 21029626  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 53978164 - 53978233
Alignment:
Q  155 ttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    |||||||||||| |||||||||||||||   |||||||||||||||||||| ||| | ||||||||||||    
T  53978164 ttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctaga 53978233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 8836234 - 8836304
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||||| ||||||||||||||    |||||||| ||||||||||| ||| | ||||||||||||    
T  8836234 cttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgttgctaga 8836304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 17479446 - 17479390
Alignment:
Q  158 tgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaa 214  Q
    |||||||||||||||||||||||||   || ||||| |||||||||||||| |||||    
T  17479446 tgttgaaaccccccaacaaaatgggagagtagaaagaaagcatcaacacatattaaa 17479390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 35519311 - 35519235
Alignment:
Q  132 aaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    |||||||||||||||||   | |||||||||||||||| |||||||||||  | |||||  |||| |||||||||||    
T  35519311 aaaggtattattcatcattgatcttgtgttgaaacccctcaacaaaatggcattgttgagcggaaacatcaacacat 35519235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 55310169 - 55310239
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctaga 224  Q
    ||||||||||||| ||||||||||||||    |||||||| ||||||||| | ||| | ||||||||||||    
T  55310169 cttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgttgctaga 55310239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 7420057 - 7420130
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacat 208  Q
    ||||| ||||| || ||| ||||||||||||| ||||||||||||||   ||| |||||||| || ||||||||    
T  7420057 ggtataattcaccaaaaatcttgtgttgaaactccccaacaaaatggtagggtagaaaggaaacaccaacacat 7420130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 38823501 - 38823606
Alignment:
Q  119 ttttctcttatccaaaggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgtt 218  Q
    |||||| ||||||||||| ||| |||| || |   ||||||| |||||||| || ||||||||    |||||| | || |||||||| ||||||||||||    
T  38823501 ttttcttttatccaaaggaattcttcaccaaaggtcttgtgtggaaaccccgcagcaaaatggtactgttgaacgaaaacatcaacatattttaaatgtt 38823600  T
Q  219 gctaga 224  Q
    ||||||    
T  38823601 gctaga 38823606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 19586780 - 19586740
Alignment:
Q  141 attcatcagaaaacttgtgttgaaaccccccaacaaaatgg 181  Q
    |||||||| ||| ||||||||||||| ||||||||||||||    
T  19586780 attcatcaaaaatcttgtgttgaaactccccaacaaaatgg 19586740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 12748 - 12821
Alignment:
Q  154 cttgtgttgaaaccccccaacaaaatggggtggttgaaaggaagcatcaacacattttaaatgttgctagatcc 227  Q
    ||||||||||| |||| |||||||||||  | ||||| ||||| |||||||||||| | |||||||||||||||    
T  12748 cttgtgttgaatcccctcaacaaaatggaattgttgagaggaaacatcaacacattcttaatgttgctagatcc 12821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 11214 - 11260
Alignment:
Q  135 ggtattattcatcagaaaacttgtgttgaaaccccccaacaaaatgg 181  Q
    ||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  11214 ggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatgg 11260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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