View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12793_low_8 (Length: 247)
Name: NF12793_low_8
Description: NF12793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12793_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41219101 - 41219332
Alignment:
| Q |
1 |
aagtgtttttgagtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41219101 |
aagtgtttttgagtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaag |
41219200 |
T |
|
| Q |
101 |
atggagttgaataaggtccccataagtcagcatgtaacaaatcaaaaggagctgaagattttattgaactatgaggaaaaggcaatctcttttgtttagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41219201 |
atggagttgaataaggtccccataagtcagcatgtaacaaatcaaaaggagctgaagattttattgaactatgaggaaaaggcaatctcttttgtttagc |
41219300 |
T |
|
| Q |
201 |
ataatgacaagcatcacatggtggagcatttt |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
41219301 |
ataatgacaagcatcacatggtggagcatttt |
41219332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 21320704 - 21320473
Alignment:
| Q |
1 |
aagtgtttttgagtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21320704 |
aagtgtttttgagtttcatcttttgttttaagaaatattacccaagtaaatccagaatagtcatccacaaaagtaaggaaatatttgtgtcctagaaaag |
21320605 |
T |
|
| Q |
101 |
atggagttgaataaggtccccataagtcagcatgtaacaaatcaaaaggagctgaagattttattgaactatgaggaaaaggcaatctcttttgtttagc |
200 |
Q |
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| T |
21320604 |
atggagttgaataaggtccccataagtcagcatgtaacaaatcaaaaggagctgaagattttattgaactataaggaaagggtaatctcttttgtttagc |
21320505 |
T |
|
| Q |
201 |
ataatgacaagcatcacatggtggagcatttt |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
21320504 |
ataatgacaagcatcacatggtggagcatttt |
21320473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 19740955 - 19740816
Alignment:
| Q |
13 |
gtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaagatggagttgaat |
112 |
Q |
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||||||||||| | ||| |||||||| |||||||||||||| ||||| ||||| ||||| || | |||||||| || ||| | || || ||| |||| |
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| T |
19740955 |
gtttcatctttggatttgagaaatataacccaagtaaatctagaataatcatctacaagggttaaaaaatatttatggccttgtaatgaaatagtagaat |
19740856 |
T |
|
| Q |
113 |
aaggtccccataagtcagcatgtaacaaatcaaaaggagc |
152 |
Q |
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|||| |||||||| ||||||||||| | |||||||||||| |
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| T |
19740855 |
aaggaccccataaatcagcatgtaaaatatcaaaaggagc |
19740816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 11337627 - 11337422
Alignment:
| Q |
13 |
gtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaagatggagttgaat |
112 |
Q |
| |
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||||||||||| | ||| |||||||| |||||||||||||| ||||| ||||| ||||| || | |||||||| || ||| | || || ||| |||| |
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| T |
11337627 |
gtttcatctttggatttgagaaatataacccaagtaaatctagaataatcatctacaagggttaaaaaatatttatggccttgtaatgaaatagtagaat |
11337528 |
T |
|
| Q |
113 |
aaggtccccataagtcagcatgtaacaaatcaaaaggagctgaagattttattgaactatgaggaaaaggcaatctcttttgtttagcataatgacaagc |
212 |
Q |
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|||| ||| |||| ||||||||||| | |||||||||||| ||| ||| |||||||||||||||| ||| | ||||||| || ||||||||| |
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| T |
11337527 |
aaggaccctataaatcagcatgtaaaatatcaaaaggagcattagactttgacaaactatgaggaaaaggtaattttctttgttttccaaaatgacaaga |
11337428 |
T |
|
| Q |
213 |
atcaca |
218 |
Q |
| |
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|||||| |
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|
| T |
11337427 |
atcaca |
11337422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 19481491 - 19481352
Alignment:
| Q |
13 |
gtttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaagatggagttgaat |
112 |
Q |
| |
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||||||||||| | ||| |||||||| | |||| ||||||| ||||| ||||| ||||| || | |||||||| || ||| | || || ||| |||| |
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| T |
19481491 |
gtttcatctttggatttgagaaatataaaccaaataaatctagaataatcatctacaagggttaaaaaatatttatggccttgtaatgaaatagtagaat |
19481392 |
T |
|
| Q |
113 |
aaggtccccataagtcagcatgtaacaaatcaaaaggagc |
152 |
Q |
| |
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|||| |||||||| ||||||||||| | |||||||||||| |
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| T |
19481391 |
aaggaccccataaatcagcatgtaaaatatcaaaaggagc |
19481352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 21285847 - 21285982
Alignment:
| Q |
14 |
tttcatcttttgttttaagaaatattacccaagtaaatcttgaatagtcatccacaagagtaaggaaatatttgtgtcctagaaaagatggagttgaata |
113 |
Q |
| |
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||||||| |||||||||||||| || ||||||||||||| ||| || ||||| || | |||||| |||||||| || ||||| | ||| ||| ||||| |
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| T |
21285847 |
tttcatcctttgttttaagaaagataacccaagtaaatcgtgagtaatcatcaaccaaagtaagaaaatatttatggcctagtagagaaatagtagaata |
21285946 |
T |
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| Q |
114 |
aggtccccataagtcagcatgtaacaaatcaaaagg |
149 |
Q |
| |
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||| ||||||| ||||||| ||| | ||||||||| |
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| T |
21285947 |
aggatcccataaatcagcatataaaatatcaaaagg |
21285982 |
T |
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