View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12794_high_1 (Length: 583)
Name: NF12794_high_1
Description: NF12794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12794_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 24727496 - 24726931
Alignment:
| Q |
1 |
cttagaaaagagaggtgagtcaatagtcacgtaaaattaccaaaatttttatagccaaataatttccaaaacaactctttcatattttctcctgtcttgt |
100 |
Q |
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| T |
24727496 |
cttagaaaagagaggtgagtcaatagtcacgtaaaattaccaaaatttttatagccaaataatttccaaaacaactctttcatattttctcctgtcttgt |
24727397 |
T |
|
| Q |
101 |
ttgacgtggaagatcaaatagctacaacacatagcatactaagaatgcctatccttgaattgaactagagctttgatacaattgattggggtgtttggga |
200 |
Q |
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| T |
24727396 |
ttgacgtggaagatcaaatagctacaacacatagcatactaagaatgcctatccttgaattgaactagagctttgatacaattgattggggtgaatggga |
24727297 |
T |
|
| Q |
201 |
agcattgagagaaacaacgtgttaatgatccaatacttgtaagagatattgacaccacatctccattgaaaatctttagaccaaggaatatatgaattac |
300 |
Q |
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| T |
24727296 |
accattgagagaaac---gtgttaatgatccaatacttgtaagagatattgacaccacatctccattgaaaatctttagaccaaggaatatatgaattac |
24727200 |
T |
|
| Q |
301 |
atatcttatatatcataatttaatccattcgtagttgatattgttaacaatatagataatcaaatagaataagacgatataaagtttcatagaataccaa |
400 |
Q |
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| T |
24727199 |
atatcttatatatcataatttaatccattcgtagttgatattgttaacaatatagataatcaaatagaataagacgatataaagtttcatagaataccaa |
24727100 |
T |
|
| Q |
401 |
taggttggaattataaaagattacaagagagtatatataaaacataatgaactgctaacttagcagtacaaagacccaataacttaaaaccaataaatcg |
500 |
Q |
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| T |
24727099 |
taggttggaattataaaaggttacaagagagtatatataaaacataatgaactgctaacttagcagtacaaagacccaataacttaaaaccaataaatcg |
24727000 |
T |
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| Q |
501 |
atgttgttcgttgcctgtcgccgctccttgttgaccgtctgaacctcttgacctgtcccgtcctctgtg |
569 |
Q |
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| T |
24726999 |
atgttgttcgttgcctgtcgccgctccttgctgaccgtctgaacctcttgacctgtcccgtcctctgtg |
24726931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 514 - 573
Target Start/End: Complemental strand, 40901355 - 40901296
Alignment:
| Q |
514 |
cctgtcgccgctccttgttgaccgtctgaacctcttgacctgtcccgtcctctgtgctcc |
573 |
Q |
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| T |
40901355 |
cctgtcgccgctcctcgataaccctctgaacctcttgacccgtctcgtcctctgtgctcc |
40901296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 2979713 - 2979632
Alignment:
| Q |
384 |
gtttcatagaataccaataggttggaattataaaagattacaagagagtatatataaaacataatgaactgctaacttagca |
465 |
Q |
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| T |
2979713 |
gtttcatggaatatcaatagcttaacattacaaaagattacaagagaatatgtataaaacctaatatactactaacttagca |
2979632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 566
Target Start/End: Original strand, 19254672 - 19254713
Alignment:
| Q |
525 |
tccttgttgaccgtctgaacctcttgacctgtcccgtcctct |
566 |
Q |
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|||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
19254672 |
tcctcgttgcccgtctgaacctcttgacctgtctcgtcctct |
19254713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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